diff options
| -rw-r--r-- | .SRCINFO | 26 | ||||
| -rw-r--r-- | PKGBUILD | 43 |
2 files changed, 69 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..44ee9c8d9fff --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,26 @@ +pkgbase = r-igvr + pkgdesc = igvR: integrative genomics viewer + pkgver = 1.16.0 + pkgrel = 1 + url = https://bioconductor.org/packages/igvR + arch = any + license = MIT + depends = r + depends = r-biocgenerics + depends = r-browserviz + depends = r-genomicalignments + depends = r-genomicranges + depends = r-httpuv + depends = r-motifdb + depends = r-rcolorbrewer + depends = r-rtracklayer + depends = r-seqlogo + depends = r-variantannotation + optdepends = r-biocstyle + optdepends = r-knitr + optdepends = r-rmarkdown + optdepends = r-runit + source = https://bioconductor.org/packages/release/bioc/src/contrib/igvR_1.16.0.tar.gz + sha256sums = d7594ccdcba77fad19a46359dabf3924e22f921cfc9b0b49eb4147d600305249 + +pkgname = r-igvr diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..53be2849f52d --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,43 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=igvR +_pkgver=1.16.0 +pkgname=r-${_pkgname,,} +pkgver=1.16.0 +pkgrel=1 +pkgdesc='igvR: integrative genomics viewer' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('MIT') +depends=( + r + r-biocgenerics + r-browserviz + r-genomicalignments + r-genomicranges + r-httpuv + r-motifdb + r-rcolorbrewer + r-rtracklayer + r-seqlogo + r-variantannotation +) +optdepends=( + r-biocstyle + r-knitr + r-rmarkdown + r-runit +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('d7594ccdcba77fad19a46359dabf3924e22f921cfc9b0b49eb4147d600305249') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" + install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}" +} +# vim:set ts=2 sw=2 et: |