diff options
| -rw-r--r-- | .SRCINFO | 31 | ||||
| -rw-r--r-- | PKGBUILD | 47 |
2 files changed, 78 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..5384b5903623 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,31 @@ +pkgbase = r-lumi + pkgdesc = BeadArray Specific Methods for Illumina Methylation and Expression Microarrays + pkgver = 2.48.0 + pkgrel = 1 + url = https://bioconductor.org/packages/lumi + arch = any + license = LGPL + depends = r + depends = r-affy + depends = r-annotate + depends = r-annotationdbi + depends = r-biobase + depends = r-dbi + depends = r-genomicfeatures + depends = r-genomicranges + depends = r-methylumi + depends = r-nleqslv + depends = r-preprocesscore + depends = r-rsqlite + optdepends = r-beadarray + optdepends = r-genefilter + optdepends = r-limma + optdepends = r-lumibarnes + optdepends = r-lumihumanall.db + optdepends = r-lumihumanidmapping + optdepends = r-rcolorbrewer + optdepends = r-vsn + source = https://bioconductor.org/packages/release/bioc/src/contrib/lumi_2.48.0.tar.gz + sha256sums = 2d7964151fc7eab8cd4bea18b17f2d3c60f233a5302bbf46d5d5fb200ba5f51b + +pkgname = r-lumi diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..dbc5f7f1a29f --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,47 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=lumi +_pkgver=2.48.0 +pkgname=r-${_pkgname,,} +pkgver=2.48.0 +pkgrel=1 +pkgdesc='BeadArray Specific Methods for Illumina Methylation and Expression Microarrays' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('LGPL') +depends=( + r + r-affy + r-annotate + r-annotationdbi + r-biobase + r-dbi + r-genomicfeatures + r-genomicranges + r-methylumi + r-nleqslv + r-preprocesscore + r-rsqlite +) +optdepends=( + r-beadarray + r-genefilter + r-limma + r-lumibarnes + r-lumihumanall.db + r-lumihumanidmapping + r-rcolorbrewer + r-vsn +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('2d7964151fc7eab8cd4bea18b17f2d3c60f233a5302bbf46d5d5fb200ba5f51b') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |