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| -rw-r--r-- | .SRCINFO | 19 | ||||
| -rw-r--r-- | PKGBUILD | 35 |
2 files changed, 54 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..0d3d8d5a9ab9 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,19 @@ +pkgbase = r-mdp + pkgdesc = Molecular Degree of Perturbation calculates scores for transcriptome data samples based on their perturbation from controls + pkgver = 1.16.0 + pkgrel = 1 + url = https://bioconductor.org/packages/mdp + arch = any + license = GPL + depends = r + depends = r-ggplot2 + depends = r-gridextra + optdepends = r-biocmanager + optdepends = r-fgsea + optdepends = r-knitr + optdepends = r-rmarkdown + optdepends = r-testthat + source = https://bioconductor.org/packages/release/bioc/src/contrib/mdp_1.16.0.tar.gz + sha256sums = 516a48889b6822e0919c84bfb7120a51d992e6de56ad6b9dcc6128837f3dfce4 + +pkgname = r-mdp diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..161d03c8a5bd --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,35 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=mdp +_pkgver=1.16.0 +pkgname=r-${_pkgname,,} +pkgver=1.16.0 +pkgrel=1 +pkgdesc='Molecular Degree of Perturbation calculates scores for transcriptome data samples based on their perturbation from controls' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-ggplot2 + r-gridextra +) +optdepends=( + r-biocmanager + r-fgsea + r-knitr + r-rmarkdown + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('516a48889b6822e0919c84bfb7120a51d992e6de56ad6b9dcc6128837f3dfce4') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |