diff options
-rw-r--r-- | .SRCINFO | 21 | ||||
-rw-r--r-- | PKGBUILD | 38 |
2 files changed, 59 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..c3a0817c8883 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,21 @@ +pkgbase = r-miqc + pkgdesc = Flexible, probabilistic metrics for quality control of scRNA-seq data + pkgver = 1.4.0 + pkgrel = 1 + url = https://bioconductor.org/packages/miQC + arch = any + license = BSD + depends = r + depends = r-flexmix + depends = r-ggplot2 + depends = r-singlecellexperiment + optdepends = r-biocstyle + optdepends = r-biomart + optdepends = r-knitr + optdepends = r-rmarkdown + optdepends = r-scater + optdepends = r-scrnaseq + source = https://bioconductor.org/packages/release/bioc/src/contrib/miQC_1.4.0.tar.gz + sha256sums = b546e40ec4291a9f411697328f945b6f7d7ef0d4fdf6ddd9c7ea1130b1f1da14 + +pkgname = r-miqc diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..1c5c53ad51a9 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,38 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=miQC +_pkgver=1.4.0 +pkgname=r-${_pkgname,,} +pkgver=1.4.0 +pkgrel=1 +pkgdesc='Flexible, probabilistic metrics for quality control of scRNA-seq data' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('BSD') +depends=( + r + r-flexmix + r-ggplot2 + r-singlecellexperiment +) +optdepends=( + r-biocstyle + r-biomart + r-knitr + r-rmarkdown + r-scater + r-scrnaseq +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('b546e40ec4291a9f411697328f945b6f7d7ef0d4fdf6ddd9c7ea1130b1f1da14') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" + install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}" +} +# vim:set ts=2 sw=2 et: |