diff options
| -rw-r--r-- | .SRCINFO | 62 | ||||
| -rw-r--r-- | PKGBUILD | 143 | ||||
| -rw-r--r-- | R.conf | 2 | ||||
| -rw-r--r-- | r-mkl.install | 16 | ||||
| -rw-r--r-- | r.desktop | 11 | ||||
| -rw-r--r-- | r.png | bin | 0 -> 4771 bytes |
6 files changed, 234 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..d50708f967e0 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,62 @@ +# Generated by makepkg 4.2.1 +# Thu Apr 30 05:15:56 UTC 2015 +pkgbase = r-mkl + pkgdesc = Language and environment for statistical computing and graphics, set up to use Intel's MKL + pkgver = 3.2.0 + pkgrel = 1 + url = http://www.r-project.org/ + install = r-mkl.install + arch = i686 + arch = x86_64 + license = GPL + makedepends = jdk8-openjdk + makedepends = gcc-fortran + makedepends = tk + depends = intel-mkl + depends = bzip2 + depends = libpng + depends = libjpeg + depends = libtiff + depends = ncurses + depends = pcre + depends = readline + depends = zlib + depends = perl + depends = gcc-libs + depends = libxt + depends = libxmu + depends = pango + depends = xz + depends = desktop-file-utils + depends = zip + depends = unzip + optdepends = tk: tcl/tk interface + optdepends = texlive-bin: latex sty files + optdepends = icc: intel compiler + optdepends = icpc: intel compiler + optdepends = xiar: intel compiler + optdepends = xild: intel compiler + provides = r=3.2.0 + conflicts = r + options = !makeflags + options = !emptydirs + backup = etc/R/Makeconf + backup = etc/R/Renviron + backup = etc/R/ldpaths + backup = etc/R/repositories + backup = etc/R/javaconf + source = http://cran.r-project.org/src/base/R-3/R-3.2.0.tar.gz + source = r.desktop + source = r.png + source = R.conf + md5sums = 66fa17ad457d7e618191aa0f52fc402e + md5sums = 44ca875140b148543148b7749c7d6f5e + md5sums = 00659f39e90627fe87f1645df5d4e3a7 + md5sums = 1dfa62c812aed9642f6e4ac34999b9fe + sha512sums = c6041c854251d51dd936d3a3632c2958a0437c58488f93e5ba810e957fb7f2276e3fe4f615fb4705f2fc5a66aa50a828b54b5e4e7b4358c7fd465c71531b9828 + sha512sums = 1a90aed5411d72dd3e7708db0cb92c518e656e1a510ece02ad934131e05b8e683b4a36da8d37198263dc19fb2f3f19656c19c01f9b67974f0d7755974076d0b7 + sha512sums = 55ed6e819dcbb231d842d825134b84d1a24db177558d5dad9369d57fd21d0239d6433c4311531171a101ca3c7c0685493e9cc6c1fe9e4e0df59f2331cff150ba + sha512sums = aae388c5b6c02d9fb857914032b0cd7d68a9f21e30c39ba11f5a29aaf1d742545482054b57ce18872eabb6605bbb359b2fc1e9be5ce6881443fdbdf6b67fab3b + +pkgname = r-mkl + diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..d57c10bdced8 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,143 @@ +# Maintainer: halfhorn <mwellsa -at- gmail -dot- com> +# Contributor: jdarch <jda -dot- cloud -plus- archlinux -at- gmail -dot- com> +# Based on the PKGBUILD for R + +pkgname=r-mkl +pkgver=3.2.0 +pkgrel=1 +pkgdesc="Language and environment for statistical computing and graphics, set up to use Intel's MKL" +arch=('i686' 'x86_64') +license=('GPL') +url=('http://www.r-project.org/') +#provides=('r=3.1.2') +provides=("r=${pkgver}") +conflicts=('r') +depends=('intel-mkl' 'bzip2' 'libpng' 'libjpeg' 'libtiff' + 'ncurses' 'pcre' 'readline' 'zlib' 'perl' 'gcc-libs' + 'libxt' 'libxmu' 'pango' 'xz' 'desktop-file-utils' 'zip' 'unzip') +makedepends=('jdk8-openjdk' 'gcc-fortran' 'tk') +optdepends=('tk: tcl/tk interface' 'texlive-bin: latex sty files' + 'icc: intel compiler' 'icpc: intel compiler' 'xiar: intel compiler' + 'xild: intel compiler') +backup=('etc/R/Makeconf' 'etc/R/Renviron' 'etc/R/ldpaths' 'etc/R/repositories' 'etc/R/javaconf') +options=('!makeflags' '!emptydirs') +install=r-mkl.install + +source=("http://cran.r-project.org/src/base/R-${pkgver%%.*}/R-${pkgver}.tar.gz" + 'r.desktop' + 'r.png' + 'R.conf') + +md5sums=('66fa17ad457d7e618191aa0f52fc402e' + '44ca875140b148543148b7749c7d6f5e' + '00659f39e90627fe87f1645df5d4e3a7' + '1dfa62c812aed9642f6e4ac34999b9fe') +sha512sums=('c6041c854251d51dd936d3a3632c2958a0437c58488f93e5ba810e957fb7f2276e3fe4f615fb4705f2fc5a66aa50a828b54b5e4e7b4358c7fd465c71531b9828' + '1a90aed5411d72dd3e7708db0cb92c518e656e1a510ece02ad934131e05b8e683b4a36da8d37198263dc19fb2f3f19656c19c01f9b67974f0d7755974076d0b7' + '55ed6e819dcbb231d842d825134b84d1a24db177558d5dad9369d57fd21d0239d6433c4311531171a101ca3c7c0685493e9cc6c1fe9e4e0df59f2331cff150ba' + 'aae388c5b6c02d9fb857914032b0cd7d68a9f21e30c39ba11f5a29aaf1d742545482054b57ce18872eabb6605bbb359b2fc1e9be5ce6881443fdbdf6b67fab3b') + +if [ "$CARCH" == "x86_64" ]; then + _intel_arch=intel64 + _intel_lib=mkl_gf_lp64 +elif [ "$CARCH" == "i686" ]; then + _intel_arch=ia32 + _intel_lib=mkl_gf +fi + +#_CC="icc" # uncomment to build with the Intel compiler + +prepare() { + cd R-${pkgver} + # set texmf dir correctly in makefile + sed -i 's|$(rsharedir)/texmf|${datarootdir}/texmf|' share/Makefile.in + # fix for texinfo 5.X + sed -i 's|test ${makeinfo_version_min} -lt 7|test ${makeinfo_version_min} -lt 0|' configure + # Fix the config script to look in Makeconf for LDFLAGS + sed -i '/LIBS=`eval $query VAR=LIBS`/a\LDFLAGS=`eval $query VAR=LDFLAGS`' src/scripts/config +} + +build() { + # Set up the environment for MKL + source /opt/intel/mkl/bin/mklvars.sh ${_intel_arch} + _icclibpath=$(echo $MKLROOT | sed "s%mkl%compiler%g")/lib/${_intel_arch} + _mkllibpath=$MKLROOT/lib/${_intel_arch} + _mkllibs=" -fopenmp -Wl,--no-as-needed -L${_mkllibpath} -l${_intel_lib} -lmkl_core -lmkl_gnu_thread -ldl -lpthread -lm" + LDFLAGS="${LDFLAGS} -L${_icclibpath}" + + + if [ $_CC = "icc" ]; then + export CC="icc" + export CXX="icpc" + export AR="xiar" + export LD="xild" + export _F77="ifort" + export _FC="ifort" + else + export _F77="gfortran" + export _FC="gfortran" + fi + + cd R-${pkgver} + ./configure --prefix=/usr \ + --libdir=/usr/lib \ + --sysconfdir=/etc/R \ + --datarootdir=/usr/share \ + rsharedir=/usr/share/R/ \ + rincludedir=/usr/include/R/ \ + rdocdir=/usr/share/doc/R/ \ + --with-x \ + --enable-R-shlib \ + --with-blas="${_mkllibs}" \ + --with-lapack \ + F77=${_F77} \ + FC=${_FC} \ + LIBnn=lib + + # Place Intel's basic math library prior to GLIBC libm + sed -i "s/\(^\| \)-lm\( \|$\)/\1-limf -lm\2/g" {./,etc/}Makeconf + + # Build the package + make + + # make libRmath.so + cd src/nmath/standalone + make shared +} + +check() { + cd R-${pkgver} + make check-recommended +} + +package() { + cd R-${pkgver} + make DESTDIR="${pkgdir}" install + + # install libRmath.so + cd src/nmath/standalone + make DESTDIR="${pkgdir}" install + + # Fixup R wrapper scripts. + sed -i "s|${pkgdir} ||" "${pkgdir}/usr/bin/R" + rm "${pkgdir}/usr/lib/R/bin/R" + cd "${pkgdir}/usr/lib/R/bin" + ln -s ../../../bin/R + + # install some freedesktop.org compatibility + install -Dm644 "${srcdir}/r.desktop" \ + "${pkgdir}/usr/share/applications/r.desktop" + install -Dm644 "${srcdir}/r.png" \ + "${pkgdir}/usr/share/pixmaps/r.png" + + # move the config directory to /etc and create symlinks + install -d "${pkgdir}/etc/R" + cd "${pkgdir}/usr/lib/R/etc" + for i in *; do + mv -f ${i} "${pkgdir}/etc/R" + ln -s /etc/R/${i} ${i} + done + + # Install ld.so.conf.d file to ensure other applications access the shared lib + install -Dm644 "${srcdir}/R.conf" "${pkgdir}/etc/ld.so.conf.d/R.conf" +} diff --git a/R.conf b/R.conf new file mode 100644 index 000000000000..e360859db790 --- /dev/null +++ b/R.conf @@ -0,0 +1,2 @@ +/usr/lib/R/lib + diff --git a/r-mkl.install b/r-mkl.install new file mode 100644 index 000000000000..522ce52e7b1f --- /dev/null +++ b/r-mkl.install @@ -0,0 +1,16 @@ +post_install() { + update-desktop-database -q + if [[ -x /usr/bin/mktexlsr ]]; then + echo ">>> updating the filename database for texlive..." + mktexlsr --quiet usr/share/texmf + fi +} + +post_upgrade() { + post_install +} + +post_remove() { + post_install +} + diff --git a/r.desktop b/r.desktop new file mode 100644 index 000000000000..7732c9bed1f8 --- /dev/null +++ b/r.desktop @@ -0,0 +1,11 @@ +[Desktop Entry] +Name=R +GenericName=environment for statistical computing +Comment=language and environment for statistical computing and graphics +Exec=R +Icon=/usr/share/pixmaps/r.png +DocPath=/usr/lib/R/doc/html/index.html +StartupNotify=true +Terminal=true +Type=Application +Categories=Science; diff --git a/r.png b/r.png Binary files differnew file mode 100644 index 000000000000..1303ccdb9641 --- /dev/null +++ b/r.png |
