diff options
-rw-r--r-- | .SRCINFO | 9 | ||||
-rw-r--r-- | PKGBUILD | 37 |
2 files changed, 29 insertions, 17 deletions
@@ -1,11 +1,11 @@ pkgbase = r-multimir pkgdesc = Integration of multiple microRNA-target databases with their disease and drug associations - pkgver = 1.22.0 + pkgver = 1.24.0 pkgrel = 1 url = https://bioconductor.org/packages/multiMiR arch = any license = MIT - depends = r + checkdepends = r-testthat depends = r-annotationdbi depends = r-biocgenerics depends = r-dplyr @@ -18,7 +18,8 @@ pkgbase = r-multimir optdepends = r-knitr optdepends = r-rmarkdown optdepends = r-testthat - source = https://bioconductor.org/packages/release/bioc/src/contrib/multiMiR_1.22.0.tar.gz - sha256sums = 5b7eca3f3b23dd9d6c86c90919037c44455a8ae126b690d41f427b2100e6e675 + source = https://bioconductor.org/packages/release/bioc/src/contrib/multiMiR_1.24.0.tar.gz + md5sums = 7102f312557b010d184bac5dea6e5009 + sha256sums = 2574a7991c9552c84c8cd9c39ba4f5508d6e21870a0126da1ff855e96c82b157 pkgname = r-multimir @@ -1,16 +1,16 @@ -# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> +# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> +# Contributor: Guoyi Zhang <guoyizhang at malacology dot net> _pkgname=multiMiR -_pkgver=1.22.0 +_pkgver=1.24.0 pkgname=r-${_pkgname,,} -pkgver=1.22.0 +pkgver=${_pkgver//-/.} pkgrel=1 -pkgdesc='Integration of multiple microRNA-target databases with their disease and drug associations' -arch=('any') +pkgdesc="Integration of multiple microRNA-target databases with their disease and drug associations" +arch=(any) url="https://bioconductor.org/packages/${_pkgname}" -license=('MIT') +license=(MIT) depends=( - r r-annotationdbi r-biocgenerics r-dplyr @@ -19,6 +19,9 @@ depends=( r-tibble r-xml ) +checkdepends=( + r-testthat +) optdepends=( r-biocstyle r-edger @@ -27,15 +30,23 @@ optdepends=( r-testthat ) source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") -sha256sums=('5b7eca3f3b23dd9d6c86c90919037c44455a8ae126b690d41f427b2100e6e675') +md5sums=('7102f312557b010d184bac5dea6e5009') +sha256sums=('2574a7991c9552c84c8cd9c39ba4f5508d6e21870a0126da1ff855e96c82b157') build() { - R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R } package() { - install -dm0755 "${pkgdir}/usr/lib/R/library" - cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" - install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}" + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" + + install -d "$pkgdir/usr/share/licenses/$pkgname" + ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname" } -# vim:set ts=2 sw=2 et: |