diff options
| -rw-r--r-- | .SRCINFO | 12 | ||||
| -rw-r--r-- | PKGBUILD | 40 |
2 files changed, 35 insertions, 17 deletions
@@ -1,11 +1,11 @@ pkgbase = r-omnipathr pkgdesc = OmniPath web service client and more - pkgver = 3.9.7 + pkgver = 3.10.1 pkgrel = 1 url = https://bioconductor.org/packages/OmnipathR arch = any license = MIT - depends = r + checkdepends = r-testthat depends = r-checkmate depends = r-crayon depends = r-curl @@ -16,6 +16,7 @@ pkgbase = r-omnipathr depends = r-jsonlite depends = r-later depends = r-logger + depends = r-lubridate depends = r-magrittr depends = r-progress depends = r-purrr @@ -25,6 +26,7 @@ pkgbase = r-omnipathr depends = r-rlang depends = r-rmarkdown depends = r-rvest + depends = r-stringi depends = r-stringr depends = r-tibble depends = r-tidyr @@ -44,10 +46,12 @@ pkgbase = r-omnipathr optdepends = r-parallelmap optdepends = r-paramhelpers optdepends = r-rgraphviz + optdepends = r-sigmajs optdepends = r-smoof optdepends = r-suprahex optdepends = r-testthat - source = https://bioconductor.org/packages/release/bioc/src/contrib/OmnipathR_3.9.7.tar.gz - sha256sums = aa566eded112113cb512f7db310a1b5c38d8be6a7c23bbfd0a075d306ad68334 + source = https://bioconductor.org/packages/release/bioc/src/contrib/OmnipathR_3.10.1.tar.gz + md5sums = c51296b40e8d580f14dc3ff6839495f6 + sha256sums = 99c3976d8f1e48dc00f5208ee100e8f24e97138cbfef917bdcfaaf0327597ff1 pkgname = r-omnipathr @@ -1,16 +1,16 @@ -# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> +# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com> +# Contributor: Guoyi Zhang <guoyizhang at malacology dot net> _pkgname=OmnipathR -_pkgver=3.9.7 +_pkgver=3.10.1 pkgname=r-${_pkgname,,} -pkgver=3.9.7 +pkgver=${_pkgver//-/.} pkgrel=1 -pkgdesc='OmniPath web service client and more' -arch=('any') +pkgdesc="OmniPath web service client and more" +arch=(any) url="https://bioconductor.org/packages/${_pkgname}" -license=('MIT') +license=(MIT) depends=( - r r-checkmate r-crayon r-curl @@ -21,6 +21,7 @@ depends=( r-jsonlite r-later r-logger + r-lubridate r-magrittr r-progress r-purrr @@ -30,6 +31,7 @@ depends=( r-rlang r-rmarkdown r-rvest + r-stringi r-stringr r-tibble r-tidyr @@ -38,6 +40,9 @@ depends=( r-xml2 r-yaml ) +checkdepends=( + r-testthat +) optdepends=( r-biocstyle r-biomart @@ -51,20 +56,29 @@ optdepends=( r-parallelmap r-paramhelpers r-rgraphviz + r-sigmajs r-smoof r-suprahex r-testthat ) source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") -sha256sums=('aa566eded112113cb512f7db310a1b5c38d8be6a7c23bbfd0a075d306ad68334') +md5sums=('c51296b40e8d580f14dc3ff6839495f6') +sha256sums=('99c3976d8f1e48dc00f5208ee100e8f24e97138cbfef917bdcfaaf0327597ff1') build() { - R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" + mkdir -p build + R CMD INSTALL "$_pkgname" -l build +} + +check() { + cd "$_pkgname/tests" + R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R } package() { - install -dm0755 "${pkgdir}/usr/lib/R/library" - cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" - install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}" + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" + + install -d "$pkgdir/usr/share/licenses/$pkgname" + ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname" } -# vim:set ts=2 sw=2 et: |