diff options
| -rw-r--r-- | .SRCINFO | 23 | ||||
| -rw-r--r-- | PKGBUILD | 39 |
2 files changed, 62 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..9667427155f7 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,23 @@ +pkgbase = r-pipeframe + pkgdesc = Pipeline framework for bioinformatics in R + pkgver = 1.12.0 + pkgrel = 1 + url = https://bioconductor.org/packages/pipeFrame + arch = any + license = GPL + depends = r + depends = r-biostrings + depends = r-bsgenome + depends = r-digest + depends = r-genomeinfodb + depends = r-magrittr + depends = r-rmarkdown + depends = r-visnetwork + optdepends = r-biocmanager + optdepends = r-knitr + optdepends = r-rtracklayer + optdepends = r-testthat + source = https://bioconductor.org/packages/release/bioc/src/contrib/pipeFrame_1.12.0.tar.gz + sha256sums = de89d975a15d9e81f8c2a377420571c817f6599b91f55bec9fc71d25cf9cbd8f + +pkgname = r-pipeframe diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..027f633a9704 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,39 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=pipeFrame +_pkgver=1.12.0 +pkgname=r-${_pkgname,,} +pkgver=1.12.0 +pkgrel=1 +pkgdesc='Pipeline framework for bioinformatics in R' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-biostrings + r-bsgenome + r-digest + r-genomeinfodb + r-magrittr + r-rmarkdown + r-visnetwork +) +optdepends=( + r-biocmanager + r-knitr + r-rtracklayer + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('de89d975a15d9e81f8c2a377420571c817f6599b91f55bec9fc71d25cf9cbd8f') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |