diff options
-rw-r--r-- | .SRCINFO | 30 | ||||
-rw-r--r-- | PKGBUILD | 48 |
2 files changed, 78 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..0dc5c2c9471c --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,30 @@ +pkgbase = r-pqsfinder + pkgdesc = Identification of potential quadruplex forming sequences + pkgver = 2.12.0 + pkgrel = 1 + url = https://bioconductor.org/packages/pqsfinder + arch = x86_64 + license = BSD + depends = r + depends = r-bh + depends = r-biostrings + depends = r-genomicranges + depends = r-iranges + depends = r-rcpp + depends = r-s4vectors + depends = make + depends = gcc + optdepends = r-biocstyle + optdepends = r-bsgenome.hsapiens.ucsc.hg38 + optdepends = r-ggplot2 + optdepends = r-gviz + optdepends = r-knitr + optdepends = r-rmarkdown + optdepends = r-rtracklayer + optdepends = r-stringi + optdepends = r-stringr + optdepends = r-testthat + source = https://bioconductor.org/packages/release/bioc/src/contrib/pqsfinder_2.12.0.tar.gz + sha256sums = 04d7523c5c597bed29ae66e23f03a11700a2564b035d3022a8a93cb58b0df4d7 + +pkgname = r-pqsfinder diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..fc6ea88162f5 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,48 @@ +# system requirements: GNU make, C++11 +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=pqsfinder +_pkgver=2.12.0 +pkgname=r-${_pkgname,,} +pkgver=2.12.0 +pkgrel=1 +pkgdesc='Identification of potential quadruplex forming sequences' +arch=('x86_64') +url="https://bioconductor.org/packages/${_pkgname}" +license=('BSD') +depends=( + r + r-bh + r-biostrings + r-genomicranges + r-iranges + r-rcpp + r-s4vectors + make + gcc +) +optdepends=( + r-biocstyle + r-bsgenome.hsapiens.ucsc.hg38 + r-ggplot2 + r-gviz + r-knitr + r-rmarkdown + r-rtracklayer + r-stringi + r-stringr + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('04d7523c5c597bed29ae66e23f03a11700a2564b035d3022a8a93cb58b0df4d7') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" + install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}" +} +# vim:set ts=2 sw=2 et: |