diff options
| -rw-r--r-- | .SRCINFO | 11 | ||||
| -rw-r--r-- | PKGBUILD | 25 |
2 files changed, 19 insertions, 17 deletions
@@ -1,20 +1,21 @@ pkgbase = r-probamr pkgdesc = Generating SAM file for PSMs in shotgun proteomics data - pkgver = 1.36.0 + pkgver = 1.38.0 pkgrel = 1 url = https://bioconductor.org/packages/proBAMr arch = any - license = Artistic2.0 - depends = r + license = Artistic-2.0 depends = r-annotationdbi depends = r-biostrings depends = r-genomicfeatures depends = r-genomicranges depends = r-iranges depends = r-rtracklayer + depends = r-txdbmaker optdepends = r-biocgenerics optdepends = r-runit - source = https://bioconductor.org/packages/release/bioc/src/contrib/proBAMr_1.36.0.tar.gz - sha256sums = 3984b967cc0b8e5a853b7a2029fc6a996ac7fb55edae5569f4d33b8bc866c04a + source = https://bioconductor.org/packages/release/bioc/src/contrib/proBAMr_1.38.0.tar.gz + md5sums = 94d83f4f906106e1da12c9f9fdbb6485 + b2sums = 63572fc9ddb06b7e835c156c1cce4f71e07d25cf0ddf72582f1faa46c418da02fb3fb362707ebb97cdd5ae61b85f718088faff53ec86903cb834f87b2dd10e2c pkgname = r-probamr @@ -1,36 +1,37 @@ # Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> _pkgname=proBAMr -_pkgver=1.36.0 +_pkgver=1.38.0 pkgname=r-${_pkgname,,} -pkgver=1.36.0 +pkgver=${_pkgver//-/.} pkgrel=1 -pkgdesc='Generating SAM file for PSMs in shotgun proteomics data' -arch=('any') -url="https://bioconductor.org/packages/${_pkgname}" -license=('Artistic2.0') +pkgdesc="Generating SAM file for PSMs in shotgun proteomics data" +arch=(any) +url="https://bioconductor.org/packages/$_pkgname" +license=('Artistic-2.0') depends=( - r r-annotationdbi r-biostrings r-genomicfeatures r-genomicranges r-iranges r-rtracklayer + r-txdbmaker ) optdepends=( r-biocgenerics r-runit ) source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") -sha256sums=('3984b967cc0b8e5a853b7a2029fc6a996ac7fb55edae5569f4d33b8bc866c04a') +md5sums=('94d83f4f906106e1da12c9f9fdbb6485') +b2sums=('63572fc9ddb06b7e835c156c1cce4f71e07d25cf0ddf72582f1faa46c418da02fb3fb362707ebb97cdd5ae61b85f718088faff53ec86903cb834f87b2dd10e2c') build() { - R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" + mkdir build + R CMD INSTALL -l build "$_pkgname" } package() { - install -dm0755 "${pkgdir}/usr/lib/R/library" - cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" + install -d "$pkgdir/usr/lib/R/library" + cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library" } -# vim:set ts=2 sw=2 et: |