diff options
| -rw-r--r-- | .SRCINFO | 14 | ||||
| -rw-r--r-- | PKGBUILD | 19 | ||||
| -rw-r--r-- | fix-build.patch | 28 |
3 files changed, 10 insertions, 51 deletions
@@ -1,7 +1,7 @@ pkgbase = r-rhdf5 pkgdesc = R Interface to HDF5 - pkgver = 2.46.1 - pkgrel = 2 + pkgver = 2.48.0 + pkgrel = 1 url = https://bioconductor.org/packages/rhdf5 arch = x86_64 license = Artistic-2.0 @@ -9,7 +9,6 @@ pkgbase = r-rhdf5 depends = openssl depends = r-rhdf5filters depends = r-rhdf5lib - depends = r-s4vectors depends = zlib optdepends = r-bench optdepends = r-biocparallel @@ -21,11 +20,8 @@ pkgbase = r-rhdf5 optdepends = r-mockery optdepends = r-rmarkdown optdepends = r-testthat - source = https://bioconductor.org/packages/release/bioc/src/contrib/rhdf5_2.46.1.tar.gz - source = fix-build.patch - md5sums = 947e662fe5f427ed0cc839e8049b431e - md5sums = e7763c1284318e623c69572315650118 - b2sums = 6915bc95d312b394a315b55935c37e6cb4be5f6207eb46ff61c1b2933409d612cccf4920d2cc650e563959c0acfcf3b1421bdd17a72cce18034c7b0f971d0253 - b2sums = f776cc9e80195b4e4dbfe85e0bf3da4c5dc1967219120072949e847ec725283e74293a71cd51a6d6b57dd54b5f2aae80c4150ba30cb74efdd83fb2b135ae5698 + source = https://bioconductor.org/packages/release/bioc/src/contrib/rhdf5_2.48.0.tar.gz + md5sums = c5ed00dbade32b03ccd37f110970ad3e + b2sums = cb1857d4d9b54d409cece482b7a39e25885565ab212b6692cf8155873a87d8dc587a545e634adbe3e1f12534ab354abb790ed76bb310d825abe62fd2a9395332 pkgname = r-rhdf5 @@ -1,10 +1,10 @@ # Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> _pkgname=rhdf5 -_pkgver=2.46.1 +_pkgver=2.48.0 pkgname=r-${_pkgname,,} pkgver=${_pkgver//-/.} -pkgrel=2 +pkgrel=1 pkgdesc="R Interface to HDF5" arch=(x86_64) url="https://bioconductor.org/packages/$_pkgname" @@ -14,7 +14,6 @@ depends=( openssl r-rhdf5filters r-rhdf5lib - r-s4vectors zlib ) optdepends=( @@ -29,17 +28,9 @@ optdepends=( r-rmarkdown r-testthat ) -source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz" - "fix-build.patch") -md5sums=('947e662fe5f427ed0cc839e8049b431e' - 'e7763c1284318e623c69572315650118') -b2sums=('6915bc95d312b394a315b55935c37e6cb4be5f6207eb46ff61c1b2933409d612cccf4920d2cc650e563959c0acfcf3b1421bdd17a72cce18034c7b0f971d0253' - 'f776cc9e80195b4e4dbfe85e0bf3da4c5dc1967219120072949e847ec725283e74293a71cd51a6d6b57dd54b5f2aae80c4150ba30cb74efdd83fb2b135ae5698') - -prepare() { - # fix format string errors - patch -Np1 -i fix-build.patch -} +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +md5sums=('c5ed00dbade32b03ccd37f110970ad3e') +b2sums=('cb1857d4d9b54d409cece482b7a39e25885565ab212b6692cf8155873a87d8dc587a545e634adbe3e1f12534ab354abb790ed76bb310d825abe62fd2a9395332') build() { mkdir build diff --git a/fix-build.patch b/fix-build.patch deleted file mode 100644 index 0facb3e5e95f..000000000000 --- a/fix-build.patch +++ /dev/null @@ -1,28 +0,0 @@ -diff --git a/rhdf5/src/H5E.c b/rhdf5/src/H5E.c -index cbb1388..eac0700 100644 ---- a/rhdf5/src/H5E.c -+++ b/rhdf5/src/H5E.c -@@ -114,9 +114,9 @@ herr_t _rhdf5PrintErrorR( hid_t estack_id, void * stream) { - strcat(str, "\n"); - strcat(str, client_data.txt[i]); - } -- error(str); -+ error("%s", str); - } else if (client_data.n == 1) { -- error(client_data.txt[0]); -+ error("%s", client_data.txt[0]); - } else { - error("libhdf5 (no error message captured)."); - } -@@ -146,9 +146,9 @@ herr_t _rhdf5PrintErrorRcompact( hid_t estack_id, void * stream) { - strcat(str, "\n"); - strcat(str, client_data.txt[i]); - } -- error(str); -+ error("%s", str); - } else if (client_data.n == 1) { -- error(client_data.txt[0]); -+ error("%s", client_data.txt[0]); - } else { - error("libhdf5 (no error message captured)."); - } |