diff options
| -rw-r--r-- | .SRCINFO | 56 | ||||
| -rw-r--r-- | PKGBUILD | 73 |
2 files changed, 129 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..30d4c1660c88 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,56 @@ +pkgbase = r-rlseq + pkgdesc = RLSeq: An analysis package for R-loop mapping data + pkgver = 1.2.0 + pkgrel = 1 + url = https://bioconductor.org/packages/RLSeq + arch = any + license = MIT + depends = r + depends = r-annotationhub + depends = r-aws.s3 + depends = r-callr + depends = r-caretensemble + depends = r-circlize + depends = r-complexheatmap + depends = r-dplyr + depends = r-genomeinfodb + depends = r-genomicfeatures + depends = r-genomicranges + depends = r-ggplot2 + depends = r-ggplotify + depends = r-ggprism + depends = r-pheatmap + depends = r-rcolorbrewer + depends = r-regioner + depends = r-rlhub + depends = r-rtracklayer + depends = r-valr + depends = r-venndiagram + optdepends = r-annotationdbi + optdepends = r-biocstyle + optdepends = r-covr + optdepends = r-dt + optdepends = r-futile.logger + optdepends = r-httr + optdepends = r-jsonlite + optdepends = r-kableextra + optdepends = r-kernlab + optdepends = r-knitr + optdepends = r-lintr + optdepends = r-magick + optdepends = r-mass + optdepends = r-org.hs.eg.db + optdepends = r-r.utils + optdepends = r-randomforest + optdepends = r-rcmdcheck + optdepends = r-readr + optdepends = r-rmarkdown + optdepends = r-rpart + optdepends = r-testthat + optdepends = r-tibble + optdepends = r-tidyr + optdepends = r-txdb.hsapiens.ucsc.hg19.knowngene + source = https://bioconductor.org/packages/release/bioc/src/contrib/RLSeq_1.2.0.tar.gz + sha256sums = 0d6c65dbf791f8f7347d58c4e66004fefcc060d3f4994e3bea73ec0b13466a52 + +pkgname = r-rlseq diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..401da9528d12 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,73 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=RLSeq +_pkgver=1.2.0 +pkgname=r-${_pkgname,,} +pkgver=1.2.0 +pkgrel=1 +pkgdesc='RLSeq: An analysis package for R-loop mapping data' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('MIT') +depends=( + r + r-annotationhub + r-aws.s3 + r-callr + r-caretensemble + r-circlize + r-complexheatmap + r-dplyr + r-genomeinfodb + r-genomicfeatures + r-genomicranges + r-ggplot2 + r-ggplotify + r-ggprism + r-pheatmap + r-rcolorbrewer + r-regioner + r-rlhub + r-rtracklayer + r-valr + r-venndiagram +) +optdepends=( + r-annotationdbi + r-biocstyle + r-covr + r-dt + r-futile.logger + r-httr + r-jsonlite + r-kableextra + r-kernlab + r-knitr + r-lintr + r-magick + r-mass + r-org.hs.eg.db + r-r.utils + r-randomforest + r-rcmdcheck + r-readr + r-rmarkdown + r-rpart + r-testthat + r-tibble + r-tidyr + r-txdb.hsapiens.ucsc.hg19.knowngene +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('0d6c65dbf791f8f7347d58c4e66004fefcc060d3f4994e3bea73ec0b13466a52') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" + install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}" +} +# vim:set ts=2 sw=2 et: |