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| -rw-r--r-- | .SRCINFO | 34 | ||||
| -rw-r--r-- | PKGBUILD | 51 |
2 files changed, 85 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..1ca246cfab18 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,34 @@ +pkgbase = r-tradeseq + pkgdesc = trajectory-based differential expression analysis for sequencing data + pkgver = 1.10.0 + pkgrel = 1 + url = https://bioconductor.org/packages/tradeSeq + arch = any + license = MIT + depends = r + depends = r-biobase + depends = r-biocparallel + depends = r-edger + depends = r-ggplot2 + depends = r-igraph + depends = r-magrittr + depends = r-matrixstats + depends = r-pbapply + depends = r-princurve + depends = r-rcolorbrewer + depends = r-s4vectors + depends = r-singlecellexperiment + depends = r-slingshot + depends = r-summarizedexperiment + depends = r-tibble + depends = r-trajectoryutils + depends = r-viridis + optdepends = r-clusterexperiment + optdepends = r-covr + optdepends = r-knitr + optdepends = r-rmarkdown + optdepends = r-testthat + source = https://bioconductor.org/packages/release/bioc/src/contrib/tradeSeq_1.10.0.tar.gz + sha256sums = a0e2749bda610c03468d388ea4ff240a2a88f4dec2b2a87c853819c573c7366d + +pkgname = r-tradeseq diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..0cbd2cf22cef --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,51 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=tradeSeq +_pkgver=1.10.0 +pkgname=r-${_pkgname,,} +pkgver=1.10.0 +pkgrel=1 +pkgdesc='trajectory-based differential expression analysis for sequencing data' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('MIT') +depends=( + r + r-biobase + r-biocparallel + r-edger + r-ggplot2 + r-igraph + r-magrittr + r-matrixstats + r-pbapply + r-princurve + r-rcolorbrewer + r-s4vectors + r-singlecellexperiment + r-slingshot + r-summarizedexperiment + r-tibble + r-trajectoryutils + r-viridis +) +optdepends=( + r-clusterexperiment + r-covr + r-knitr + r-rmarkdown + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('a0e2749bda610c03468d388ea4ff240a2a88f4dec2b2a87c853819c573c7366d') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" + install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}" +} +# vim:set ts=2 sw=2 et: |