diff options
| -rw-r--r-- | .SRCINFO | 25 | ||||
| -rw-r--r-- | PKGBUILD | 41 |
2 files changed, 66 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..4f0e3d070bd2 --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,25 @@ +pkgbase = r-vcfarray + pkgdesc = Representing on-disk / remote VCF files as array-like objects + pkgver = 1.12.0 + pkgrel = 1 + url = https://bioconductor.org/packages/VCFArray + arch = any + license = GPL + depends = r + depends = r-biocgenerics + depends = r-delayedarray + depends = r-genomicfiles + depends = r-genomicranges + depends = r-rsamtools + depends = r-s4vectors + depends = r-variantannotation + optdepends = r-biocmanager + optdepends = r-biocstyle + optdepends = r-knitr + optdepends = r-rmarkdown + optdepends = r-seqarray + optdepends = r-testthat + source = https://bioconductor.org/packages/release/bioc/src/contrib/VCFArray_1.12.0.tar.gz + sha256sums = 490a97af0ee4ee1a4482bf03d322fde6ad7bb1ff09544fbf97220566d1e6ef9f + +pkgname = r-vcfarray diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..8cf2305f76cc --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,41 @@ +# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net> + +_pkgname=VCFArray +_pkgver=1.12.0 +pkgname=r-${_pkgname,,} +pkgver=1.12.0 +pkgrel=1 +pkgdesc='Representing on-disk / remote VCF files as array-like objects' +arch=('any') +url="https://bioconductor.org/packages/${_pkgname}" +license=('GPL') +depends=( + r + r-biocgenerics + r-delayedarray + r-genomicfiles + r-genomicranges + r-rsamtools + r-s4vectors + r-variantannotation +) +optdepends=( + r-biocmanager + r-biocstyle + r-knitr + r-rmarkdown + r-seqarray + r-testthat +) +source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz") +sha256sums=('490a97af0ee4ee1a4482bf03d322fde6ad7bb1ff09544fbf97220566d1e6ef9f') + +build() { + R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}" +} + +package() { + install -dm0755 "${pkgdir}/usr/lib/R/library" + cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library" +} +# vim:set ts=2 sw=2 et: |