diff options
| -rw-r--r-- | .SRCINFO | 9 | ||||
| -rw-r--r-- | PKGBUILD | 8 |
2 files changed, 8 insertions, 9 deletions
@@ -1,20 +1,19 @@ # Generated by mksrcinfo v8 -# Sun Jan 10 10:05:21 UTC 2016 +# Sun May 29 18:26:52 UTC 2016 pkgbase = samtools pkgdesc = tools for manipulating next-generation sequencing data - pkgver = 1.3 + pkgver = 1.3.1 pkgrel = 1 url = http://www.htslib.org/ arch = i686 arch = x86_64 license = custom depends = htslib - depends = perl optdepends = luajit: needed for r2plot.lua vcfutils.lua optdepends = python2: needed for varfilter.py options = staticlibs - source = https://github.com/samtools/samtools/releases/download/1.3/samtools-1.3.tar.bz2 - md5sums = 7ab98b5c988e254d9bb5d796bf9337c9 + source = https://github.com/samtools/samtools/releases/download/1.3.1/samtools-1.3.1.tar.bz2 + md5sums = a7471aa5a1eb7fc9cc4c6491d73c2d88 pkgname = samtools @@ -2,24 +2,24 @@ # Contributor: Markus Heuser <markus.heuser@web.de> pkgname=samtools -pkgver=1.3 +pkgver=1.3.1 pkgrel=1 pkgdesc="tools for manipulating next-generation sequencing data" arch=('i686' 'x86_64') url="http://www.htslib.org/" license=('custom') -depends=('htslib' 'perl') +depends=('htslib') optdepends=('luajit: needed for r2plot.lua vcfutils.lua' 'python2: needed for varfilter.py') options=('staticlibs') source=(https://github.com/samtools/$pkgname/releases/download/$pkgver/$pkgname-$pkgver.tar.bz2) -md5sums=('7ab98b5c988e254d9bb5d796bf9337c9') +md5sums=('a7471aa5a1eb7fc9cc4c6491d73c2d88') prepare() { cd $srcdir/$pkgname-$pkgver # prevent shipped htslib to be used - rm -rf htslib-1.3 + rm -rf htslib-1.3.1 sed -e 's|#!/usr/bin/env python|#!/usr/bin/env python2|' \ -i misc/varfilter.py |