diff options
| -rw-r--r-- | .SRCINFO | 28 | ||||
| -rw-r--r-- | PKGBUILD | 48 | ||||
| -rw-r--r-- | seaview.desktop | 4 | ||||
| -rw-r--r-- | seaview.png | bin | 0 -> 25087 bytes | |||
| -rw-r--r-- | seaview.sharedmimeinfo | 12 |
5 files changed, 40 insertions, 52 deletions
@@ -1,20 +1,24 @@ pkgbase = seaview - pkgdesc = GUI for multiple sequence alignment and molecular phylogeny - pkgver = 4.7 - pkgrel = 1 + pkgdesc = GUI for multiple sequence alignment and molecular phylogeny. https://doi.org/10.1093/molbev/msp259 + pkgver = 5.0.5 + pkgrel = 8 url = http://doua.prabi.fr/software/seaview arch = x86_64 license = GPL3 - depends = shared-mime-info + makedepends = make + makedepends = gcc + makedepends = fltk depends = fltk - optdepends = clustal-omega: alignment - optdepends = muscle: alignment - source = ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_4.7.tar.gz + optdepends = clustal-omega + optdepends = muscle + optdepends = gblocks + optdepends = phyml + optdepends = bionj + source = https://doua.prabi.fr/software/seaview_data/seaview.tar.gz source = seaview.desktop - source = seaview.sharedmimeinfo - md5sums = 9c1ee28e7f870b76991de17b22d7dfcb - md5sums = 94f13509470dd69f053ffc178884e292 - md5sums = 9592a71ee55fa6edfbaddbce2d5469b9 + source = seaview.png + md5sums = 09f6800973308a91316bb820c4331cb0 + md5sums = e4cfc6d76819c5cd8e68ac93c2121557 + md5sums = 337583df60b24d724d96e511a3f063ce pkgname = seaview - @@ -1,38 +1,34 @@ -# Maintainer: Steffen Weber <-boenki-gmx-de-> +# Maintainer: Guoyi Zhang <myname at malacology dot net> +# Contributor: Steffen Weber <-boenki-gmx-de-> # Contributor: Nick B <Shirakawasuna at gmail _dot_com> pkgname=seaview -pkgver=4.7 -pkgrel=1 -pkgdesc="GUI for multiple sequence alignment and molecular phylogeny" +pkgver=5.0.5 +pkgrel=8 +pkgdesc="GUI for multiple sequence alignment and molecular phylogeny. https://doi.org/10.1093/molbev/msp259" arch=('x86_64') url="http://doua.prabi.fr/software/seaview" license=('GPL3') -depends=('shared-mime-info' 'fltk') -optdepends=('clustal-omega: alignment' - 'muscle: alignment') -source=("ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/$pkgname/archive/${pkgname}_${pkgver}.tar.gz" +depends=('fltk') +makedepends=('make' 'gcc' 'fltk') +optdepends=('clustal-omega' + 'muscle' + 'gblocks' + 'phyml' + 'bionj') +source=("https://doua.prabi.fr/software/seaview_data/seaview.tar.gz" 'seaview.desktop' - 'seaview.sharedmimeinfo') -md5sums=('9c1ee28e7f870b76991de17b22d7dfcb' - '94f13509470dd69f053ffc178884e292' - '9592a71ee55fa6edfbaddbce2d5469b9') - -build() { - cd seaview + 'seaview.png') +md5sums=('09f6800973308a91316bb820c4331cb0' + 'e4cfc6d76819c5cd8e68ac93c2121557' + '337583df60b24d724d96e511a3f063ce') +build(){ + cd $pkgname make } package() { - install -d "$pkgdir"/usr/{bin,share/{pixmaps,man/man1,applications,icons/hicolor/scalable/apps,mime/packages,doc/seaview}} - - install -m644 seaview.desktop "$pkgdir/usr/share/applications/" - install -m644 seaview.sharedmimeinfo "$pkgdir/usr/share/mime/packages/seaview.xml" - - cd seaview - install -m755 seaview "$pkgdir/usr/bin/" - install -m644 seaview.xpm "$pkgdir/usr/share/pixmaps/" - install -m644 seaview.svg "$pkgdir/usr/share/icons/hicolor/scalable/apps/" - install -m644 seaview.html "$pkgdir/usr/share/doc/seaview/" - install -m644 seaview.1 "$pkgdir/usr/share/man/man1/" + install -Dm 755 "$srcdir"/$pkgname/$pkgname "$pkgdir"/usr/bin/$pkgname + install -Dm 644 seaview.desktop $pkgdir/usr/share/applications/seaview.desktop + install -Dm 755 "$srcdir"/seaview.png $pkgdir/usr/share/seaview/seaview.png } diff --git a/seaview.desktop b/seaview.desktop index db5ade7c7078..4e8efde423c9 100644 --- a/seaview.desktop +++ b/seaview.desktop @@ -4,8 +4,8 @@ [Desktop Entry] Version=1.0 Terminal=false -Icon=seaview -Exec=seaview %f +Icon=/usr/share/seaview/seaview.png +Exec=/usr/bin/seaview %f Name=SeaView GenericName=Multiple sequence alignment editor GenericName[en]=Multiple sequence alignment editor diff --git a/seaview.png b/seaview.png Binary files differnew file mode 100644 index 000000000000..97bd907dbc26 --- /dev/null +++ b/seaview.png diff --git a/seaview.sharedmimeinfo b/seaview.sharedmimeinfo deleted file mode 100644 index cde1beff1465..000000000000 --- a/seaview.sharedmimeinfo +++ /dev/null @@ -1,12 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<mime-info xmlns='http://www.freedesktop.org/standards/shared-mime-info'> - <mime-type type="text/x-clustalw-alignment"> - <sub-class-of type="text/plain"/> - <comment>Multiple sequence alignment in Clustal W format</comment> - <comment xml:lang="fr">Alignement multiple de séquences au format Clustal W</comment> - <magic priority="50"> - <match type="string" offset="0" value="CLUSTAL"/> - </magic> - <glob pattern="*.aln"/> - </mime-type> -</mime-info> |
