diff options
| -rw-r--r-- | .SRCINFO | 10 | ||||
| -rw-r--r-- | PKGBUILD | 7 | ||||
| -rw-r--r-- | set-standard.patch | 13 |
3 files changed, 6 insertions, 24 deletions
@@ -1,8 +1,8 @@ # Generated by mksrcinfo v8 -# Thu Aug 4 07:25:44 UTC 2016 +# Wed Aug 10 07:22:25 UTC 2016 pkgbase = sga pkgdesc = de novo sequence assembler using string graphs - pkgver = 0.10.14 + pkgver = 0.10.15 pkgrel = 1 url = https://github.com/jts/sga arch = x86_64 @@ -12,11 +12,9 @@ pkgbase = sga depends = bamtools depends = jemalloc depends = python - source = sga-0.10.14.tar.gz::https://github.com/jts/sga/archive/v0.10.14.tar.gz - source = set-standard.patch + source = sga-0.10.15.tar.gz::https://github.com/jts/sga/archive/v0.10.15.tar.gz source = configure-rpath.patch - md5sums = 211edb372898d6515dcde98d17078b7b - md5sums = SKIP + md5sums = 990aed1593f8072650c6366e5cf32519 md5sums = SKIP pkgname = sga @@ -1,7 +1,7 @@ # Maintainer: Christian Krause ("wookietreiber") <kizkizzbangbang@googlemail.com> pkgname=sga -pkgver=0.10.14 +pkgver=0.10.15 pkgrel=1 pkgdesc="de novo sequence assembler using string graphs" arch=('x86_64' 'i686') @@ -10,16 +10,13 @@ license=('GPL3') depends=('bamtools' 'jemalloc' 'python') makedepends=('sparsehash') source=("$pkgname-$pkgver.tar.gz::https://github.com/jts/sga/archive/v$pkgver.tar.gz" - 'set-standard.patch' 'configure-rpath.patch') -md5sums=('211edb372898d6515dcde98d17078b7b' - 'SKIP' +md5sums=('990aed1593f8072650c6366e5cf32519' 'SKIP') prepare() { cd $srcdir/$pkgname-$pkgver - patch -p1 -i $srcdir/set-standard.patch patch -p1 -i $srcdir/configure-rpath.patch cd src diff --git a/set-standard.patch b/set-standard.patch deleted file mode 100644 index 3e6dc2a690fa..000000000000 --- a/set-standard.patch +++ /dev/null @@ -1,13 +0,0 @@ ---- a/src/configure.ac -+++ b/src/configure.ac -@@ -92,8 +92,8 @@ fi - - # Set compiler flags. - AC_SUBST(AM_CXXFLAGS, "-Wall -Wextra $fail_on_warning -Wno-unknown-pragmas") --AC_SUBST(CXXFLAGS, "-O3") --AC_SUBST(CFLAGS, "-O3") -+AC_SUBST(CXXFLAGS, "-std=c++98 -O3") -+AC_SUBST(CFLAGS, "-std=gnu99 -O3") - AC_SUBST(CPPFLAGS, "$CPPFLAGS $openmp_cppflags $sparsehash_include $bamtools_include") - AC_SUBST(LDFLAGS, "$openmp_cppflags $external_malloc_ldflags $bamtools_ldflags $LDFLAGS") - |