diff options
| -rw-r--r-- | .SRCINFO | 10 | ||||
| -rw-r--r-- | PKGBUILD | 25 |
2 files changed, 17 insertions, 18 deletions
@@ -1,6 +1,6 @@ pkgbase = sratoolkit - pkgdesc = A toolkit from NCBI to download SRA data files and reference sequences and to do file format conversions - pkgver = 2.8.2_1 + pkgdesc = The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives + pkgver = 2.10.5 pkgrel = 1 url = http://www.ncbi.nlm.nih.gov/books/NBK158900/ arch = x86_64 @@ -9,10 +9,10 @@ pkgbase = sratoolkit depends = libxml2 depends = gcc-libs-multilib depends = fuse - source = http://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/2.8.2-1/sratoolkit.2.8.2-1-ubuntu64.tar.gz + source = http://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/2.10.5/sratoolkit.2.10.5-ubuntu64.tar.gz source = https://raw.githubusercontent.com/ncbi/sra-tools/master/LICENSE - sha1sums = ab2adff5e32c99e13f7d250d0a4730a62555ad0f - sha1sums = 189d29edf32eeec2cf10f5d43b3533207f3f3e87 + md5sums = d68cd7ec55b47269853f9f77adfaccf8 + md5sums = 9ba753649b72f0bbcac5741536c6953d pkgname = sratoolkit @@ -1,8 +1,10 @@ -# Maintainer: Sauliusl <luksaulius[at]gmail[dotcom]> +# Maintainer: Dimitris Kiziridis <ragouel at outlook dot com> +# Contributor: Sauliusl <luksaulius[at]gmail[dotcom]> + pkgname=sratoolkit -pkgver=2.8.2_1 +pkgver=2.10.5 pkgrel=1 -pkgdesc="A toolkit from NCBI to download SRA data files and reference sequences and to do file format conversions" +pkgdesc="The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives" arch=('x86_64') url="http://www.ncbi.nlm.nih.gov/books/NBK158900/" license=('custom') @@ -10,21 +12,18 @@ groups=('sequence_analysis') depends=('libxml2' 'gcc-libs-multilib' 'fuse') source=("http://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/${pkgver//_/-}/sratoolkit.${pkgver//_/-}-ubuntu64.tar.gz" "https://raw.githubusercontent.com/ncbi/sra-tools/master/LICENSE") - -sha1sums=('ab2adff5e32c99e13f7d250d0a4730a62555ad0f' - '189d29edf32eeec2cf10f5d43b3533207f3f3e87') +md5sums=('d68cd7ec55b47269853f9f77adfaccf8' + '9ba753649b72f0bbcac5741536c6953d') package() { + pkgverdash=${pkgver//_/-} install -d ${pkgdir}/usr/bin install -d ${pkgdir}/usr/share/doc/${pkgname} install -d ${pkgdir}/usr/share/doc/${pkgname}/example/perl - - pkgverdash=${pkgver//_/-} - - cp -r $srcdir/sratoolkit.$pkgverdash-ubuntu64/bin/* ${pkgdir}/usr/bin/ + install -dm644 ${pkgdir}/usr/share/${pkgname}/ + cp -ar $srcdir/sratoolkit.$pkgverdash-ubuntu64/schema ${pkgdir}/usr/share/${pkgname}/ + cp -ar $srcdir/sratoolkit.$pkgverdash-ubuntu64/bin/* ${pkgdir}/usr/bin/ install -Dm755 $srcdir/sratoolkit.$pkgverdash-ubuntu64/example/perl/* ${pkgdir}/usr/share/doc/${pkgname}/example/perl/ - install -Dm644 $srcdir/sratoolkit.$pkgverdash-ubuntu64/README* ${pkgdir}/usr/share/doc/${pkgname} - install -Dm644 $srcdir/LICENSE ${pkgdir}/usr/share/licenses/${pkgname} -} +}
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