diff options
| -rw-r--r-- | .SRCINFO | 15 | ||||
| -rw-r--r-- | PKGBUILD | 23 |
2 files changed, 38 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO new file mode 100644 index 000000000000..be355a47986c --- /dev/null +++ b/.SRCINFO @@ -0,0 +1,15 @@ +# Generated by mksrcinfo v8 +# Thu Mar 10 15:01:41 UTC 2016 +pkgbase = trimmomatic + pkgdesc = Trimmomatic: A flexible read trimming tool for Illumina NGS data + pkgver = 0.35 + pkgrel = 1 + url = http://www.usadellab.org/cms/?page=trimmomatic + arch = any + license = GPL3 + depends = java-environment>=6 + source = http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.35.zip + md5sums = 564e62f4f0f9f56d22762b237d4c69c4 + +pkgname = trimmomatic + diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..71d0f4dbb30d --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,23 @@ +# Maintainer: ZJLIN <zjin841126@gmail.com> +pkgname=trimmomatic +pkgver=0.35 +pkgrel=1 +pkgdesc='Trimmomatic: A flexible read trimming tool for Illumina NGS data' +arch=('any') +url="http://www.usadellab.org/cms/?page=trimmomatic" +license=('GPL3') +depends=('java-environment>=6') +source=("http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-$pkgver.zip") +md5sums=('564e62f4f0f9f56d22762b237d4c69c4') + +package() { + mkdir $pkgdir/opt/ + mv $srcdir/Trimmomatic-$pkgver $srcdir/Trimmomatic + cp -r $srcdir/Trimmomatic/ $pkgdir/opt/ + + mkdir -p "${pkgdir}/usr/bin/" + execmd=("exec java -jar $pkgdir/opt/Trimmomatic/trimmomatic-$pkgver.jar"' "$@"') + echo $execmd > $pkgdir/opt/Trimmomatic/trimmomatic + chmod 755 $pkgdir/opt/Trimmomatic/trimmomatic + ln -s "/opt/Trimmomatic/trimmomatic" "${pkgdir}/usr/bin" +} |