diff options
| -rw-r--r-- | .SRCINFO | 25 | ||||
| -rw-r--r-- | PKGBUILD | 35 |
2 files changed, 37 insertions, 23 deletions
@@ -1,8 +1,8 @@ # Generated by mksrcinfo v8 -# Wed Apr 17 11:36:32 UTC 2019 +# Fri May 31 15:22:05 UTC 2019 pkgbase = viennarna pkgdesc = RNA Secondary Structure Prediction and Comparison - pkgver = 2.4.12 + pkgver = 2.4.13 pkgrel = 1 url = http://www.tbi.univie.ac.at/RNA arch = x86_64 @@ -14,32 +14,33 @@ pkgbase = viennarna makedepends = python makedepends = libtool makedepends = check + makedepends = mpfr + makedepends = gsl options = staticlibs options = !strip - source = http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-2.4.12.tar.gz - sha256sums = 3fca7bd5fd1ed48b6c4551be653aa320373230a97904b35b5a3d7dda8b1ac232 + source = http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-2.4.13.tar.gz + sha256sums = 915c271b48536a3cc60b3109f11f7fd99dcd26d22621ee50f05e7f1c2f90cabe pkgname = viennarna depends = perl - depends = gsl depends = mpfr - optdepends = gsl: use a variety of optimization methods in RNApvmin + depends = gsl optdepends = gri: create 2D plots of secondary structure landscape with RNA2Dfold provides = Kinfold=1.3 provides = RNAforester=2.0 - provides = RNAlocmin=2.1 - provides = viennarna2=2.4.12 - provides = libRNA=2.4.12 + provides = kinwalker=2.0 + provides = viennarna2=2.4.13 + provides = libRNA=2.4.13 pkgname = python-rna depends = python - depends = viennarna=2.4.12 + depends = viennarna=2.4.13 pkgname = python2-rna depends = python2 - depends = viennarna=2.4.12 + depends = viennarna=2.4.13 pkgname = perl-rna depends = perl - depends = viennarna=2.4.12 + depends = viennarna=2.4.13 @@ -2,7 +2,7 @@ pkgbase=viennarna pkgname=('viennarna' 'python-rna' 'python2-rna' 'perl-rna') -pkgver=2.4.12 +pkgver=2.4.13 pkgrel=1 pkgdesc="RNA Secondary Structure Prediction and Comparison" arch=('x86_64' 'i686') @@ -13,16 +13,21 @@ makedepends=( 'perl' 'python2' 'python' 'libtool' - 'check') + 'check' + 'mpfr' + 'gsl') source=(http://www.tbi.univie.ac.at/RNA/packages/source/ViennaRNA-${pkgver}.tar.gz) options=('staticlibs' '!strip') - -sha256sums=('3fca7bd5fd1ed48b6c4551be653aa320373230a97904b35b5a3d7dda8b1ac232') +sha256sums=('915c271b48536a3cc60b3109f11f7fd99dcd26d22621ee50f05e7f1c2f90cabe') build() { cd "${srcdir}/ViennaRNA-${pkgver}" - ./configure --with-cluster --prefix=/usr INSTALLDIRS=vendor + ./configure \ + --with-cluster \ + --with-kinwalker \ + --prefix=/usr \ + INSTALLDIRS=vendor make } @@ -34,11 +39,15 @@ check() { package_viennarna() { depends=('perl' - 'gsl' - 'mpfr') - optdepends=('gsl: use a variety of optimization methods in RNApvmin' - 'gri: create 2D plots of secondary structure landscape with RNA2Dfold') - provides=('Kinfold=1.3' 'RNAforester=2.0' 'RNAlocmin=2.1' "viennarna2=${pkgver}" "libRNA=${pkgver}") + 'mpfr' + 'gsl') + optdepends=('gri: create 2D plots of secondary structure landscape with RNA2Dfold') + provides=('Kinfold=1.3' + 'RNAforester=2.0' + 'kinwalker=2.0' + "viennarna2=${pkgver}" + "libRNA=${pkgver}") + conflict=('kinwalker') cd "${srcdir}/ViennaRNA-${pkgver}" @@ -54,6 +63,8 @@ package_viennarna() { make DESTDIR="${pkgdir}" install cd ../Cluster make DESTDIR="${pkgdir}" install + cd ../Kinwalker + make DESTDIR="${pkgdir}" install cd ../RNAlocmin make DESTDIR="${pkgdir}" install cd ../.. @@ -63,11 +74,13 @@ package_viennarna() { make DESTDIR="${pkgdir}" install cd ../.. - # install manpages, documentation, and misc files + # install manpages, documentation, examples, and misc files cd man make DESTDIR="${pkgdir}" install cd ../doc make DESTDIR="${pkgdir}" install + cd ../examples + make DESTDIR="${pkgdir}" install cd ../misc make DESTDIR="${pkgdir}" install cd .. |