diff options
| -rw-r--r-- | .SRCINFO | 9 | ||||
| -rw-r--r-- | PKGBUILD | 32 |
2 files changed, 26 insertions, 15 deletions
@@ -1,20 +1,19 @@ pkgbase = wiggletools pkgdesc = basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency - pkgver = 1.0 + pkgver = 1.1 pkgrel = 1 url = https://github.com/Ensembl/WiggleTools arch = i686 arch = x86_64 license = Apache - checkdepends = python2 makedepends = git makedepends = libmariadbclient makedepends = libpng makedepends = unzip depends = gsl - depends = openssl - source = wiggletools-1.0.tar.gz::https://github.com/Ensembl/WiggleTools/archive/v1.0.tar.gz - md5sums = 151aa1ccfaacd77183bf2ac053ee18a0 + depends = python2 + source = wiggletools-1.1.tar.gz::https://github.com/Ensembl/WiggleTools/archive/v1.1.tar.gz + md5sums = 7b7052b755415936324d7919756bd070 pkgname = wiggletools @@ -1,31 +1,33 @@ # Maintainer: Christian Krause ("wookietreiber") <kizkizzbangbang@googlemail.com> pkgname=wiggletools -pkgver=1.0 +pkgver=1.1 pkgrel=1 pkgdesc="basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency" arch=('i686' 'x86_64') url="https://github.com/Ensembl/WiggleTools" license=('Apache') -depends=(gsl openssl) -makedepends=(git libmariadbclient libpng unzip) -checkdepends=(python2) +depends=('gsl' 'python2') +makedepends=('git' 'libmariadbclient' 'libpng' 'unzip') source=("$pkgname-$pkgver.tar.gz::https://github.com/Ensembl/WiggleTools/archive/v$pkgver.tar.gz") -md5sums=('151aa1ccfaacd77183bf2ac053ee18a0') +md5sums=('7b7052b755415936324d7919756bd070') prepare() { cd $srcdir/WiggleTools-$pkgver git archive --format=zip -9 --remote=git://genome-source.cse.ucsc.edu/kent.git beta src/userApps > userApps.zip - unzip -d userApps -j userApps.zip + unzip -o -d userApps -j userApps.zip rm userApps.zip - sed -e 's|python|python2|' \ + sed -e 's|-ltinfo||g' \ + -i samtools/Makefile + + # use python2 + sed -e 's|python test.py|python2 test.py|' \ -i Makefile - sed -e 's|-lgsl|-lgsl -lgslcblas|g' \ - -e 's|-static||g' \ - -i src/Makefile + sed -e 's|#!/usr/bin/env python|#!/usr/bin/env python2|' \ + -i python/wiggletools/*.py } build() { @@ -52,4 +54,14 @@ package() { cd $srcdir/WiggleTools-$pkgver install -Dm755 bin/wiggletools $pkgdir/usr/bin/wiggletools + + for pythonscript in bin/*.py ; do + install -Dm755 $pythonscript $pkgdir/usr/bin/$(basename $pythonscript .py) + done + + rm $pkgdir/usr/bin/__init__ + + for shellscript in bin/*.sh ; do + install -Dm755 $shellscript $pkgdir/usr/bin/$(basename $shellscript .sh) + done } |