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Diffstat (limited to 'CHANGELOG')
| -rw-r--r-- | CHANGELOG | 23 |
1 files changed, 23 insertions, 0 deletions
diff --git a/CHANGELOG b/CHANGELOG index e8e9a2645f39..cedee317ee4d 100644 --- a/CHANGELOG +++ b/CHANGELOG @@ -1,3 +1,26 @@ +4.7 +--- + + - Make :py:class:`proforma.MassModification` objects hashable + (`#130 <https://github.com/levitsky/pyteomics/pull/130>`_ by Joshua Klein). + - Fix `#132 <https://github.com/levitsky/pyteomics/issues/132>`_ + (`#133 <https://github.com/levitsky/pyteomics/pull/133>`_ by Joshua Klein). + - Fix thermolysin cleavage rule (`#135 <https://github.com/levitsky/pyteomics/issues/135>`_). + - Fix `#136 <https://github.com/levitsky/pyteomics/issues/136>`_. + - :py:func:`pyteomics.mass.mass.calculate_mass` now supports `ProForma <https://www.psidev.info/proforma>`_. + A sequence or a :py:class:`proforma.ProForma` object can be passed with the `proforma` keyword argument + (`#137 <https://github.com/levitsky/pyteomics/pull/137>`_). + - Fix: restored the ability of :py:class:`IndexedTextReader` parsers (:py:class:`pyteomics.mgf.IndexedMGF`, + :py:class:`pyteomics.fasta.IndexedFASTA`, etc.) to load the byte offset index from a previously saved byte offset file + (created with :py:meth:`cls.prebuild_byte_offset_file` or :py:meth:`reader.write_byte_offsets`) + (`#142 <https://github.com/levitsky/pyteomics/pull/142>`_). + - API change: uncodumented method :py:meth:`_build_index` of indexing XML parsers renamed to :py:meth:`build_byte_index` + (`#142 <https://github.com/levitsky/pyteomics/pull/142>`_). + - Add a warning when creating an :py:class:`IndexedTextReader` instance with an empty offset index. + This warning can be disabled by passing `warn_if_empty=False` + (`#138 <https://github.com/levitsky/pyteomics/pull/138>`_). + + 4.6.3 ----- |