diff options
Diffstat (limited to 'CHANGELOG')
| -rw-r--r-- | CHANGELOG | 15 |
1 files changed, 14 insertions, 1 deletions
diff --git a/CHANGELOG b/CHANGELOG index e5743c0cd048..b9483672c03b 100644 --- a/CHANGELOG +++ b/CHANGELOG @@ -1,3 +1,16 @@ +4.5.6 +----- + + - New function :py:func:`pyteomics.proforma.set_unimod_path` allowing the ProForma parsing machinery + to work with a local Unimod copy (`#85 <https://github.com/levitsky/pyteomics/pull/85>`_ by Joshua Klein). + See `documentation <https://pyteomics.readthedocs.io/en/latest/api/proforma.html#cv-disk-caching>`_ for a usage example. + - New method :py:meth:`pyteomics.proforma.Proforma.fragments` to generate m/z for an ion series + (`#85 <https://github.com/levitsky/pyteomics/pull/85>`_ by Joshua Klein). + - New function :py:func:`pyteomics.parser.to_proforma` helps convert *modX* sequences to ProForma. + - Fix: prevent :func:`pyteomics.mass.mass.fast_mass2` from changing `aa_mass`. + - Update :py:func:`pyteomics.pylab_aux.annotate_spectrum` for compatibility with latest :py:mod:`spectrum_utils`. + Pyteomics is now compatible with :py:mod:`spectrum_utils` 0.4.0 and newer. + 4.5.5 ----- @@ -17,7 +30,7 @@ - Fix ThreadPool shutdown and add new parameter `ephemeral_pool` in :py:class:`pyteomics.usi.PROXIAggregator` (`#67 <https://github.com/levitsky/pyteomics/pull/67>`_ by Joshua Klein). - - Bugfix in `pyteomics.proforma.GenericModificationResolver` (`#68 <https://github.com/levitsky/pyteomics/issues/68>`_) by Joshua Klein. + - Bugfix in `pyteomics.proforma.GenericModificationResolver` (`#68 <https://github.com/levitsky/pyteomics/issues/68>`_ by Joshua Klein). - New helper function :py:func:`pyteomics.fasta.decoy_entries`. - New arguments `charge_carrier`, `absolute` in :py:func:`mass.calculate_mass` and :py:meth:`mass.Composition.mass` (`#61 <https://github.com/levitsky/pyteomics/pull/61>`_). |