diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 41 |
1 files changed, 17 insertions, 24 deletions
@@ -1,37 +1,30 @@ -# Maintainer: Michael Schubert <mschu.dev at google mail> +# Maintainer: Michael Schubert <mschu.dev at gmail> pkgname=augustus -pkgver=2.5.5 +_pkgname=Augustus +pkgver=3.3.3 pkgrel=1 pkgdesc="A eucaryotic gene prediction program" arch=('i686' 'x86_64') url="http://augustus.gobics.de/" license=('custom:Artistic-2.0') -depends=('perl') -source=("http://augustus.gobics.de/binaries/$pkgname.$pkgver.tar.gz" - "http://augustus.gobics.de/binaries/LICENCE.TXT") -md5sums=('234adc8fe4c2ff0b70715fbf00173668' - '7e2216d2af60d1644c220cbad40b0e36') +depends=('samtools' 'htslib' 'bamtools') +source=($pkgname-$pkgver.tar.gz::https://github.com/Gaius-Augustus/Augustus/archive/v$pkgver.tar.gz) +sha256sums=('2fc5f9fd2f0c3bba2924df42ffaf55b5c130228cea18efdb3b6dfab9efa8c9f4') options=(!strip) +prepare() { + cd $_pkgname-$pkgver + sed -i "/\/usr\/local\/bin/d" Makefile + sed -i "/bam2wig/d" auxprogs/Makefile # requires special dir structure of util +} + build() { - cd $pkgname.$pkgver - make all + cd $_pkgname-$pkgver + make SAMTOOLS=/usr/include/bam } package() { - cd $pkgname.$pkgver - - mkdir -p "$pkgdir/usr/share/augustus/scripts" - mkdir -p "$pkgdir/etc/"{augustus,profile.d} - - cp -R bin "$pkgdir/usr/" - cp -R config "$pkgdir/etc/augustus/" - cp -R {docs,examples} "$pkgdir/usr/share/augustus/" - cp scripts/*.pl "$pkgdir/usr/share/augustus/scripts/" - - echo export AUGUSTUS_CONFIG_PATH="/etc/augustus/config/" > "$pkgdir/etc/profile.d/augustus.sh" - chmod a+rx "$pkgdir/etc/profile.d/augustus.sh" - - install -Dm644 "$srcdir/LICENCE.TXT" "$pkgdir/usr/share/licenses/$pkgname/LICENSE" + cd $_pkgname-$pkgver + make INSTALLDIR="$pkgdir" install + install -Dm644 src/LICENSE.TXT "$pkgdir"/usr/share/licenses/augustus/LICENSE } - |