diff options
Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 15 |
1 files changed, 10 insertions, 5 deletions
@@ -2,15 +2,17 @@ pkgname=bcftools pkgver=1.3 -pkgrel=2 +pkgrel=3 pkgdesc="Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants" arch=('i686' 'x86_64') url="http://samtools.github.io/bcftools/" license=('GPL') -depends=('htslib' 'perl') # 'gsl' +depends=('gsl' 'htslib' 'perl') source=(https://github.com/samtools/$pkgname/releases/download/$pkgver/$pkgname-$pkgver.tar.bz2 + https://github.com/pd3/bcftools/commit/946b7eea6d699731f72124d87b3176e0ced4d25a.patch makefile-system-htslib.patch) md5sums=('17f1f7d9e4a03d64a114b43ca896899f' + 'dd48ce1ac8ef91ea409f8f235574de2e' 'e5145d175dcd242634baf42749b838f0') prepare() { @@ -21,22 +23,25 @@ prepare() { # patch Makefile to make it work with a system-provided htslib patch -i $srcdir/makefile-system-htslib.patch + + # patch gsl >= 2 problem + patch -i $srcdir/946b7eea6d699731f72124d87b3176e0ced4d25a.patch } build() { cd $srcdir/$pkgname-$pkgver - make prefix=/usr plugindir=/usr/lib/$pkgname # USE_GPL=1 + make prefix=/usr plugindir=/usr/lib/$pkgname USE_GPL=1 } check() { cd $srcdir/$pkgname-$pkgver - make prefix=/usr plugindir=/usr/lib/$pkgname # USE_GPL=1 test + make prefix=/usr plugindir=/usr/lib/$pkgname USE_GPL=1 test } package() { cd $srcdir/$pkgname-$pkgver - make prefix=/usr plugindir=/usr/lib/$pkgname DESTDIR=$pkgdir install # USE_GPL=1 + make prefix=/usr plugindir=/usr/lib/$pkgname USE_GPL=1 DESTDIR=$pkgdir install } |