diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 36 |
1 files changed, 9 insertions, 27 deletions
@@ -1,29 +1,19 @@ -# Maintainer: Christian Krause ("wookietreiber") <christian.krause@mailbox.org> +# Maintainer: Andrew O'Neill <andrew at meanjollies dot com> +# Contributor: Christian Krause ("wookietreiber") <christian.krause@mailbox.org> pkgname=bcftools -pkgver=1.5 +pkgver=1.6 pkgrel=1 -pkgdesc="Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants" +pkgdesc="A program for variant calling and manipulating files in the Variant Call Format (VCF) and its binary counterpart BCF" arch=('i686' 'x86_64') url="http://samtools.github.io/bcftools/" license=('GPL') -depends=('gsl' 'htslib') -optdepends=('python2: needed for some scripts') -source=(https://github.com/samtools/bcftools/releases/download/$pkgver/$pkgname-$pkgver.tar.bz2) - -prepare() { - cd $srcdir/$pkgname-$pkgver - - # prevent shipped htslib to be used - rm -rf htslib-$pkgver - - sed -e 's|#!/usr/bin/env python|#!/usr/bin/env python2|' \ - -e 's|#!/usr/bin/python|#!/usr/bin/env python2|' \ - -i misc/plot-roh.py misc/guess-ploidy.py -} +depends=('gsl' 'htslib' 'python-matplotlib' 'python') +source=(https://github.com/samtools/$pkgname/releases/download/$pkgver/$pkgname-$pkgver.tar.bz2) +sha256sums=('293010736b076cf684d2873928924fcc3d2c231a091084c2ac23a8045c7df982') build() { - cd $srcdir/$pkgname-$pkgver + cd $pkgname-$pkgver ./configure \ --prefix=/usr \ @@ -35,16 +25,8 @@ build() { make } -check() { - cd $srcdir/$pkgname-$pkgver - - make check -} - package() { - cd $srcdir/$pkgname-$pkgver + cd $pkgname-$pkgver make DESTDIR=$pkgdir install } - -md5sums=('e43efe3df5f9c55acb4b48cee214d281') |