diff options
Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 11 |
1 files changed, 8 insertions, 3 deletions
@@ -1,13 +1,14 @@ # Maintainer: Christian Krause ("wookietreiber") <christian.krause@mailbox.org> pkgname=bcftools -pkgver=1.4 +pkgver=1.4.1 pkgrel=1 pkgdesc="Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants" arch=('i686' 'x86_64') url="http://samtools.github.io/bcftools/" license=('GPL') depends=('gsl' 'htslib') +optdepends=('python2: needed for some scripts') source=(https://github.com/samtools/bcftools/releases/download/$pkgver/$pkgname-$pkgver.tar.bz2 makefile-system-htslib.patch) @@ -17,6 +18,10 @@ prepare() { # prevent shipped htslib to be used rm -rf htslib-$pkgver + sed -e 's|#!/usr/bin/env python|#!/usr/bin/env python2|' \ + -e 's|#!/usr/bin/python|#!/usr/bin/env python2|' \ + -i misc/plot-roh.py misc/guess-ploidy.py + # patch Makefile to make it work with a system-provided htslib patch -i $srcdir/makefile-system-htslib.patch } @@ -39,5 +44,5 @@ package() { make prefix=/usr plugindir=/usr/lib/$pkgname USE_GPL=1 DESTDIR=$pkgdir install } -md5sums=('50ccf0a073bd70e99cdb3c8be830416e' - 'baba7d2fc8947c7ec29ff4498637ea85') +md5sums=('103729569ca3e265b13d2fed5775016e' + '1777e7d3bcfd428de407f62c870904cb') |