diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 29 |
1 files changed, 12 insertions, 17 deletions
@@ -1,47 +1,42 @@ # Maintainer: Christian Krause ("wookietreiber") <kizkizzbangbang@googlemail.com> pkgname=bcftools -pkgver=1.2 -pkgrel=3 +pkgver=1.3 +pkgrel=1 pkgdesc="Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants" arch=('i686' 'x86_64') url="http://samtools.github.io/bcftools/" license=('GPL') depends=('gsl' 'htslib' 'perl') -source=($pkgname-$pkgver.tar.gz::https://github.com/samtools/bcftools/archive/$pkgver.tar.gz - bcftools-profile.sh +source=(https://github.com/samtools/$pkgname/releases/download/$pkgver/$pkgname-$pkgver.tar.bz2 makefile-system-htslib.patch) -md5sums=('87efbd0092b6e4828c17842c9ae57ec9' - '50efd8fdb3f4c11a5dff7748c666d90e' - '5ae8f6433b42acf1f4bc7b7658a10805') +md5sums=('17f1f7d9e4a03d64a114b43ca896899f' + '697d169f4a729c0fc61720490b60ea5e') prepare() { cd $srcdir/$pkgname-$pkgver + # prevent shipped htslib to be used + rm -rf htslib-1.3 + # patch Makefile to make it work with a system-provided htslib - patch -Np1 -i $srcdir/makefile-system-htslib.patch + patch -i $srcdir/makefile-system-htslib.patch } build() { cd $srcdir/$pkgname-$pkgver - make USE_GPL=1 + make -e prefix=/usr plugindir=/usr/lib/$pkgname USE_GPL=1 } check() { cd $srcdir/$pkgname-$pkgver - make USE_GPL=1 test + make -e prefix=/usr plugindir=/usr/lib/$pkgname USE_GPL=1 test } package() { cd $srcdir/$pkgname-$pkgver - make USE_GPL=1 DESTDIR=$pkgdir prefix=/usr install - - for plugin in plugins/*.so ; do - install -Dm755 $plugin $pkgdir/usr/lib/bcftools/$(basename $plugin) - done - - install -Dm644 $srcdir/bcftools-profile.sh $pkgdir/etc/profile.d/bcftools.sh + make -e prefix=/usr plugindir=/usr/lib/$pkgname USE_GPL=1 DESTDIR=$pkgdir install } |