diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 17 |
1 files changed, 6 insertions, 11 deletions
@@ -1,31 +1,26 @@ # Maintainer: Christian Krause ("wookietreiber") <kizkizzbangbang@googlemail.com> pkgname=bcftools -pkgver=1.3 -pkgrel=3 +pkgver=1.3.1 +pkgrel=1 pkgdesc="Reading/writing BCF2/VCF/gVCF files and calling/filtering/summarising SNP and short indel sequence variants" arch=('i686' 'x86_64') url="http://samtools.github.io/bcftools/" license=('GPL') -depends=('gsl' 'htslib' 'perl') +depends=('gsl' 'htslib') source=(https://github.com/samtools/$pkgname/releases/download/$pkgver/$pkgname-$pkgver.tar.bz2 - https://github.com/pd3/bcftools/commit/946b7eea6d699731f72124d87b3176e0ced4d25a.patch makefile-system-htslib.patch) -md5sums=('17f1f7d9e4a03d64a114b43ca896899f' - 'dd48ce1ac8ef91ea409f8f235574de2e' - 'e5145d175dcd242634baf42749b838f0') +md5sums=('575001e9fca37cab0c7a7287ad4b1cdb' + '3547e133251f4d088cb087019183efa7') prepare() { cd $srcdir/$pkgname-$pkgver # prevent shipped htslib to be used - rm -rf htslib-1.3 + rm -rf htslib-1.3.1 # patch Makefile to make it work with a system-provided htslib patch -i $srcdir/makefile-system-htslib.patch - - # patch gsl >= 2 problem - patch -i $srcdir/946b7eea6d699731f72124d87b3176e0ced4d25a.patch } build() { |