diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 23 |
1 files changed, 9 insertions, 14 deletions
@@ -1,35 +1,30 @@ # Maintainer: Athemis <alexander.minges[at]googlemail[dot]com> # Contributor: sauliusl pkgname=bowtie -pkgver=1.1.2 +pkgver=1.2.2 pkgrel=1 pkgdesc="Bowtie is an alignment tool for short nucleotide sequences against long templates" url="http://bowtie-bio.sf.net" arch=('x86_64' 'i686') license=('PerlArtistic') depends=() -source=("http://downloads.sourceforge.net/bowtie-bio/${pkgname}-${pkgver}-src.zip" +source=("https://github.com/BenLangmead/bowtie/archive/v${pkgver}_p1.tar.gz" "makefile_uname.patch") -sha256sums=('b1e9ccc825207efd1893d9e33244c681bcb89b9b2b811eb95a9f5a92eab637ae' +sha256sums=('e1b02b2e77a0d44a3dd411209fa1f44f0c4ee304ef5cc83f098275085740d5a1' '6b77e333a3ef10e3f787fd2983afd69cdb48e82347fc3316510c2ba5639742a3') build() { - cd "${srcdir}/${pkgname}-${pkgver}" + cd "${srcdir}/${pkgname}-${pkgver}_p1" patch -Np0 -i ../makefile_uname.patch - make + make NO_TBB=1 EXTRA_CXXFLAGS="-std=c++03" } package() { - cd "${srcdir}/${pkgname}-${pkgver}" - install -d ${pkgdir}/usr/bin + cd "${srcdir}/${pkgname}-${pkgver}_p1" + make prefix=/usr DESTDIR="${pkgdir}" install install -d ${pkgdir}/usr/share/doc/${pkgname} - install -Dm755 bowtie ${pkgdir}/usr/bin - install -Dm755 bowtie-build* ${pkgdir}/usr/bin - install -Dm755 bowtie-inspect* ${pkgdir}/usr/bin - install -Dm755 bowtie-align* ${pkgdir}/usr/bin - install -Dm755 scripts/* ${pkgdir}/usr/bin - install -Dm644 doc/* ${pkgdir}/usr/share/doc/${pkgname} - install -Dm644 TUTORIAL "${pkgdir}/usr/share/doc/${pkgname}/TUTORIAL" + find doc -type f -exec install -Dm644 "{}" "${pkgdir}/usr/share/doc/${pkgname}" \; + install -Dm644 TUTORIAL "${pkgdir}/usr/share/doc/$pkgname/TUTORIAL" install -Dm644 MANUAL "$pkgdir/usr/share/doc/$pkgname/MANUAL" install -Dm644 MANUAL.markdown "$pkgdir/usr/share/doc/$pkgname/MANUAL.markdown" install -Dm644 LICENSE "$pkgdir/usr/share/licenses/$pkgname/LICENSE" |