diff options
Diffstat (limited to 'PKGBUILD')
-rw-r--r-- | PKGBUILD | 19 |
1 files changed, 10 insertions, 9 deletions
@@ -2,16 +2,16 @@ # Maintainer: Grey Christoforo <first name [at] last name [dot] net> pkgname=bowtie2 -pkgver=2.3.5.1 +pkgver=2.4.2 pkgrel=1 pkgdesc="Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequence." arch=("any") depends=('termcap') optdepends=('intel-tbb: faster multithreading') url="http://bowtie-bio.sourceforge.net/bowtie2" -license=('GPL3') -source=("https://github.com/BenLangmead/${pkgname}/archive/v${pkgver}.tar.gz") -md5sums=('8afc22b107667ebe2d5b17f49dd37b4a') +license=(GPL3) +source=("https://github.com/BenLangmead/bowtie2/archive/v${pkgver}.tar.gz") +md5sums=('d5f8674aed8bdbf6b96bd07f3df528ee') prepare() { cd "${srcdir}/${pkgname}-${pkgver}" @@ -19,7 +19,7 @@ prepare() { } build() { - cd "${srcdir}/${pkgname}-${pkgver}" + cd "bowtie2-${pkgver}" if pacman -Q intel-tbb > /dev/null 2>/dev/null; then msg2 "Building with Intel's TBB multithreading support" EXTRA_FLAGS="-std=gnu++98" NO_TBB=0 make prefix=/usr @@ -31,9 +31,10 @@ build() { package() { mkdir -p "${pkgdir}/opt/" - cp -a "${srcdir}/${pkgname}-${pkgver}" "${pkgdir}/opt/${pkgname}" - cd "${srcdir}/${pkgname}-${pkgver}" + cp -a "${srcdir}/bowtie2-${pkgver}" "${pkgdir}/opt/bowtie2" + cd "${srcdir}/bowtie2-${pkgver}" make prefix=/usr DESTDIR="${pkgdir}" install - install -Dm644 ${srcdir}/${pkgname}-${pkgver}/MANUAL -t "${pkgdir}/usr/share/doc/${pkgname}" - install -Dm644 ${srcdir}/${pkgname}-${pkgver}/LICENSE -t "$pkgdir/usr/share/licenses/${pkgname}" + mkdir -p "${pkgdir}/usr/share/doc/bowtie2" + cp -a ${srcdir}/bowtie2-${pkgver}/doc "${pkgdir}/usr/share/doc/bowtie2" + install -Dm644 ${srcdir}/bowtie2-${pkgver}/LICENSE -t "${pkgdir}/usr/share/licenses/bowtie2" } |