diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 75 |
1 files changed, 44 insertions, 31 deletions
@@ -1,51 +1,64 @@ # Maintainer: Michael Schubert <mschu.dev at gmail> +# Maintainer: Eugene Dvoretsky <radioxoma at gmail> pkgname=cellprofiler-analyst-git -pkgver=20121017 +pkgver=2.0.4.r459.g7a96978 pkgrel=1 pkgdesc="Analysis software for cellular images" arch=('i686' 'x86_64') url="http://www.cellprofiler.org/" license=('GPLv2') -depends=('cellprofiler-git') -makedepends=('git' 'python2-distribute') +depends=( + 'wxpython2.8' + 'python2-numpy' + 'python2-scipy' + 'python2-matplotlib' + 'python2-imaging' + 'python2-pytz' + 'python2-verlib' + 'python2-javabridge' + 'python2-bioformats') +optdepends=('cellprofiler: prepare data for CPA') provides=('cellprofiler-analyst') -conflicts=('cellprofiler-analyst') +source=("$pkgname::git+https://github.com/CellProfiler/CellProfiler-Analyst#commit=7a96978" + "cellprofiler-analyst.desktop") +sha256sums=('SKIP' + 'SKIP') -_gitroot="git://github.com/CellProfiler/CellProfiler-Analyst.git" -_gitname="CellProfiler-Analyst" - -build() { - cd "$srcdir" - - msg "Connecting to GIT server...." +pkgver() { + cd "$pkgname" + git describe --long --tags | sed 's/\([^-]*-g\)/r\1/;s/-/./g' +} - if [ -d $_gitname ] ; then - cd $_gitname && git pull origin - msg "The local files are updated." - else - git clone $_gitroot $_gitname - fi +prepare() { + cd "$srcdir/$pkgname" + # Should be fixed in the source three + sed -i '1i#!/usr/bin/env python2' ./CellProfiler-Analyst.py + rm -rf `find "$pkgdir" -name "tests" -type d` +} - cd "$srcdir/$_gitname/cpa" +build() { + cd "$srcdir/$pkgname" + # force selection of wxpython2.8 (xargs helps handle spaces) + find . -name '*.py' -print0 | xargs -0 sed -i -e "s/^\(.*\)import wx$/\1import wxversion\n\1wxversion.select(\"2.8\")\n\1import wx/g" - CP_HOME=/usr/lib/python2.7/site-packages/cellprofiler python2 setup.py build + # python2 setup.py build # Unusable build system (only for Mac now) + python2 -m compileall cpa } +# check() { +# cd "$srcdir/CellProfiler-Analyst" +# python2 setup.py test # Only for Mac now +# } + package() { - cd "$srcdir/$_gitname" + # python2 setup.py install --root="$pkgdir"/ --optimize=1 # Only for Mac now pydir=`python2 -c "from distutils.sysconfig import get_python_lib; print get_python_lib()"` - -mkdir -p "$pkgdir/usr/bin" -cat > "$pkgdir/usr/bin/cpa" << EOF -#!/bin/sh -python2 "$pydir/cpa/cpa.py" -EOF -chmod 755 "$pkgdir/usr/bin/cpa" - mkdir -p "$pkgdir/$pydir" - cp -r cpa "$pkgdir/$pydir" - python2 -m compileall "$pkgdir/$pydir/cpa/" || return 0 + cd "$srcdir/$pkgname" + cp -r cpa "$pkgdir/$pydir" + install -Dm755 CellProfiler-Analyst.py "$pkgdir/usr/bin/cellprofiler-analyst" + install -D LICENSE "$pkgdir/usr/share/licenses/$pkgname/LICENSE" + install -Dm644 "$srcdir/cellprofiler-analyst.desktop" "$pkgdir/usr/share/applications/cellprofiler-analyst.desktop" } - |