1 files changed, 33 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..9043da72168b
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,33 @@
+# Maintainer: Tomasz Zok <tomasz.zok [at] gmail.com>
+pkgname=contrafold
+pkgver=2.02
+pkgrel=1
+pkgdesc="CONditional TRAining for RNA Secondary Structure Prediction"
+arch=('i686' 'x86_64')
+url="http://contra.stanford.edu/contrafold/"
+license=('BSD')
+makedepends=('gcc>=4.1.3')
+source=("http://contra.stanford.edu/contrafold/${pkgname}_v${pkgver/./_}.tar.gz"
+        "LBFGS.patch"
+        "Utilities.patch")
+md5sums=('cea66c63df835fe7f790c7f49ce83ef3'
+         '7f5cc03bb145d7f4ff8e18ede22bbdd7'
+         '1edad72c52d336a0fa17862371dd60d0')
+
+prepare() {
+	cd "$pkgname/src"
+	patch -p0 -i "$srcdir/LBFGS.patch"
+	patch -p0 -i "$srcdir/Utilities.patch"
+}
+
+build() {
+	cd "$pkgname/src"
+	make clean
+    make
+}
+
+package() {
+	cd "$pkgname/src"
+    install -d "$pkgdir/usr/bin/"
+    install contrafold "$pkgdir/usr/bin/"
+}