diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 26 |
1 files changed, 23 insertions, 3 deletions
@@ -1,19 +1,39 @@ # Maintainer: Hector Mtz-Seara <hseara at gmail dot com> pkgname=dssp -pkgver=2.2.1 -pkgrel=3 +pkgver=3.0.0 +pkgrel=1 pkgdesc="Secondary structure assignment for proteins" arch=('i686' 'x86_64') url="http://swift.cmbi.ru.nl/gv/dssp/HTML/distrib.html" license=('custom') depends=('boost-libs') source=("$pkgname-$pkgver.tar.gz::ftp://ftp.cmbi.ru.nl/pub/software/$pkgname/$pkgname-$pkgver.tgz") -sha1sums=('b0fe1b2a4c5c04efaac9f89442fa6f2947ff75b7') +sha1sums=('4b35bc8e7d9f62262b00b918d5b194fbdd65ffaa') + + +#With gcc6 currently there are less errors in the tests +# also the compilation is possible in cuda capable machines +export CC=gcc-6 +export CXX=g++-6 +export CFLAGS="-march=native -O2 -pipe -fstack-protector-strong" +export CXXFLAGS="${CFLAGS}" prepare() { cd "$srcdir/$pkgname-$pkgver" sed -i 's/-static//' makefile + sed -i 's:<boost/tr1/tuple.hpp>:<boost/tuple/tuple.hpp>:' ./src/mas.cpp + sed -i 's/tr1::tuple/boost::tuple/' ./src/mas.cpp + sed -i 's:<boost/tr1/tuple.hpp>:<boost/tuple/tuple.hpp>:' ./src/primitives-3d.h + sed -i 's/std::tr1::tuple/boost::tuple/' ./src/primitives-3d.h + sed -i 's/std::tr1::tuple/boost::tuple/' ./src/primitives-3d.cpp + sed -i 's/std::tr1::tuple/boost::tuple/' ./src/structure.h + sed -i 's/std::tr1::tuple/boost::tuple/' ./src/structure.cpp + sed -i 's/std::tr1::tie/boost::tie/' ./src/dssp.cpp + # HECTOR + sed -i 's/std::tr1::make_tuple/boost::make_tuple/' ./src/structure.cpp + sed -i 's/std::tr1::make_tuple/boost::make_tuple/' ./src/primitives-3d.cpp + } build() { |