diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 70 |
1 files changed, 70 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..7434d129e3fe --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,70 @@ +# Maintainer: Malacology <guoyizhang at malacology dot com> +# Contributor: Malacology <guoyizhang at malacology dot com> + +pkgname=easycodeml +pkgver=1.21 +pkgrel=1 +pkgdesc="A visual tool for analysis of selection using CodeML" +arch=('x86_64') +url="https://github.com/BioEasy/EasyCodeML" +license=('unknow') +source=("https://github.com/starsareintherose/easycodeml/releases/download/${pkgver}/EasyCodeML.zip") +sha256sums=('SKIP') +depends=( + 'jre-openjdk-headless' + 'jre-openjdk' + 'jdk-openjdk' + 'openjdk-doc' + 'openjdk-src' +) +package() { + mkdir "${pkgdir}/usr" + mkdir "${pkgdir}/usr/share" + mkdir "${pkgdir}/usr/share/applications" + mkdir "${pkgdir}/usr/share/EasyCodeML" + mkdir "${pkgdir}/usr/share/EasyCodeML/Custom" + mkdir "${pkgdir}/usr/share/EasyCodeML/Custom/dat" + mkdir "${pkgdir}/usr/share/EasyCodeML/CodeMLSrc" + mkdir "${pkgdir}/usr/share/EasyCodeML/CodeMLSrc/Linux" + + + install -m 755 ${srcdir}/EasyCodeML/EasyCodeML.jar ${pkgdir}/usr/share/EasyCodeML/EasyCodeML.jar + install -m 755 ${srcdir}/EasyCodeML/Quick_Guide.pdf ${pkgdir}/usr/share/EasyCodeML/Quick_Guide.pdf + install -m 755 ${srcdir}/EasyCodeML/README.md ${pkgdir}/usr/share/EasyCodeML/README.md + install -m 755 "${srcdir}/EasyCodeML/Version History.txt" "${pkgdir}/usr/share/EasyCodeML/Version History.txt" + install -m 755 ${srcdir}/EasyCodeML/Citation.ris ${pkgdir}/usr/share/EasyCodeML/Citation.ris + + install -m 755 ${srcdir}/EasyCodeML/CodeMLSrc/chi2.c ${pkgdir}/usr/share/EasyCodeML/CodeMLSrc/chi2.c + install -m 755 ${srcdir}/EasyCodeML/CodeMLSrc/chi2.c ${pkgdir}/usr/share/EasyCodeML/CodeMLSrc/chi2.c + install -m 755 "${srcdir}/EasyCodeML/CodeMLSrc/Compile Commands for Mac or Linux" "${pkgdir}/usr/share/EasyCodeML/CodeMLSrc/Compile Commands for Mac or Linux" + install -m 755 ${srcdir}/EasyCodeML/CodeMLSrc/paml.h ${pkgdir}/usr/share/EasyCodeML/CodeMLSrc/paml.h + install -m 755 ${srcdir}/EasyCodeML/CodeMLSrc/tools.c ${pkgdir}/usr/share/EasyCodeML/CodeMLSrc/tools.c + install -m 755 ${srcdir}/EasyCodeML/CodeMLSrc/treespace.c ${pkgdir}/usr/share/EasyCodeML/CodeMLSrc/treespace.c + install -m 755 ${srcdir}/EasyCodeML/CodeMLSrc/treesub.c ${pkgdir}/usr/share/EasyCodeML/CodeMLSrc/treesub.c + install -m 755 ${srcdir}/EasyCodeML/CodeMLSrc/Linux/chi2.exe ${pkgdir}/usr/share/EasyCodeML/CodeMLSrc/Linux/chi2.exe + install -m 755 ${srcdir}/EasyCodeML/CodeMLSrc/Linux/codeml.exe ${pkgdir}/usr/share/EasyCodeML/CodeMLSrc/Linux/codeml.exe + + install -m 755 ${srcdir}/EasyCodeML/Custom/codeml.ctl ${pkgdir}/usr/share/EasyCodeML/Custom/codeml.ctl + install -m 755 ${srcdir}/EasyCodeML/Custom/default.ctl ${pkgdir}/usr/share/EasyCodeML/Custom/default.ctl + + install -m 755 ${srcdir}/EasyCodeML/Custom/dat/cpREV10.dat ${pkgdir}/usr/share/EasyCodeML/Custom/dat/cpREV10.dat + install -m 755 ${srcdir}/EasyCodeML/Custom/dat/cpREV64.dat ${pkgdir}/usr/share/EasyCodeML/Custom/dat/cpREV64.dat + install -m 755 ${srcdir}/EasyCodeML/Custom/dat/dayhoff.dat ${pkgdir}/usr/share/EasyCodeML/Custom/dat/dayhoff.dat + install -m 755 ${srcdir}/EasyCodeML/Custom/dat/dayhoff-dcmut.dat ${pkgdir}/usr/share/EasyCodeML/Custom/dat/dayhoff-dcmut.dat + install -m 755 ${srcdir}/EasyCodeML/Custom/dat/g1974a.dat ${pkgdir}/usr/share/EasyCodeML/Custom/dat/g1974a.dat + install -m 755 ${srcdir}/EasyCodeML/Custom/dat/g1974c.dat ${pkgdir}/usr/share/EasyCodeML/Custom/dat/g1974c.dat + install -m 755 ${srcdir}/EasyCodeML/Custom/dat/g1974p.dat ${pkgdir}/usr/share/EasyCodeML/Custom/dat/g1974p.dat + install -m 755 ${srcdir}/EasyCodeML/Custom/dat/g1974v.dat ${pkgdir}/usr/share/EasyCodeML/Custom/dat/g1974v.dat + install -m 755 ${srcdir}/EasyCodeML/Custom/dat/grantham.dat ${pkgdir}/usr/share/EasyCodeML/Custom/dat/grantham.dat + install -m 755 ${srcdir}/EasyCodeML/Custom/dat/jones.dat ${pkgdir}/usr/share/EasyCodeML/Custom/dat/jones.dat + install -m 755 ${srcdir}/EasyCodeML/Custom/dat/jones-dcmut.dat ${pkgdir}/usr/share/EasyCodeML/Custom/dat/jones-dcmut.dat + install -m 755 ${srcdir}/EasyCodeML/Custom/dat/lg.dat ${pkgdir}/usr/share/EasyCodeML/Custom/dat/lg.dat + install -m 755 ${srcdir}/EasyCodeML/Custom/dat/miyata.dat ${pkgdir}/usr/share/EasyCodeML/Custom/dat/miyata.dat + install -m 755 ${srcdir}/EasyCodeML/Custom/dat/mtArt.dat ${pkgdir}/usr/share/EasyCodeML/Custom/dat/mtArt.dat + install -m 755 ${srcdir}/EasyCodeML/Custom/dat/mtmam.dat ${pkgdir}/usr/share/EasyCodeML/Custom/dat/mtmam.dat + install -m 755 ${srcdir}/EasyCodeML/Custom/dat/mtREV24.dat ${pkgdir}/usr/share/EasyCodeML/Custom/dat/mtREV24.dat + install -m 755 ${srcdir}/EasyCodeML/Custom/dat/MtZoa.dat ${pkgdir}/usr/share/EasyCodeML/Custom/dat/MtZoa.dat + install -m 755 ${srcdir}/EasyCodeML/Custom/dat/wag.dat ${pkgdir}/usr/share/EasyCodeML/Custom/dat/wag.dat + + cp ~/.cache/yay/easycodeml/easycodeml.desktop ${pkgdir}/usr/share/applications +} |