diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 115 |
1 files changed, 52 insertions, 63 deletions
@@ -1,8 +1,7 @@ -# Maintainer : George Eleftheriou <eleftg> -# Contributor: Martin Diehl <MartinDiehl> -# Contributor: Jingbei Li <petronny> +# Maintainer: Martin Diehl <https://martin-diehl.net> # Contributor: Ronald van Haren <ronald.archlinux.org> -# Contributor: Bruno Pagani (a.k.a. ArchangeGabriel) <archange@archlinux.org> +# Contributor: Bruno Pagani <archange@archlinux.org> +# Contributor: George Eleftheriou <eleftg> # Contributor: Stefan Husmann <stefan-husmann@t-online.de> # Contributor: damir <damir@archlinux.org> # Contributor: Tom K <tomk@runbox.com> @@ -12,74 +11,57 @@ _pkgname=hdf5 _mpi=openmpi pkgname=${_pkgname}-${_mpi}-java -_prefix=/usr -pkgver=1.10.5 +pkgver=1.12.0 pkgrel=1 -pkgdesc="General purpose library and file format for storing scientific data (${_mpi} version) (full version including its Java Native Interfaces)" -arch=('x86_64') -url="https://portal.hdfgroup.org/display/support" -license=('custom') -depends=('bash' 'libaec' "${_mpi}") -makedepends=('cmake' 'time' 'java-environment' 'gcc-fortran') -options=('staticlibs') -provides=('hdf5-java' 'hdf5-openmpi' 'hdf5' 'hdf5-cpp-fortran' "hdf5-fortran-${_mpi}") -conflicts=('hdf5-java' 'hdf5' 'hdf5-openmpi') -replaces=("hdf5-fortran-${_mpi}") -source=("https://support.hdfgroup.org/ftp/HDF5/releases/${_pkgname}-${pkgver:0:4}/${_pkgname}-${pkgver}/src/${_pkgname}-${pkgver}.tar.bz2" - 'mpi.patch') -md5sums=('7c19d6b81ee2a3ba7d36f6922b2f90d3' - '63b43e3d4a5bbea4bcecc84874e08913') - -prepare() { - mkdir -p build - cd "${_pkgname}-${pkgver}" - - # FS#33343 - patch -p1 -i ../mpi.patch -} +pkgdesc="General purpose library and file format for storing scientific data (${_mpi} version including Java Native Interfaces)" +arch=(x86_64) +url="https://www.hdfgroup.org/hdf5" +license=(custom) +depends=(zlib libaec bash ${_mpi}) +makedepends=(cmake time gcc-fortran java-environment) +provides=(hdf5 hdf5-cpp-fortran hdf5-fortran-${_mpi} hdf5-${_mpi} hdf5-java) +conflicts=(hdf5 hdf5-openmpi hdf5-java) +replaces=(hdf5-fortran-${_mpi}) +options=(staticlibs) +source=("https://support.hdfgroup.org/ftp/HDF5/releases/${_pkgname}-${pkgver:0:4}/${_pkgname}-${pkgver/_/-}/src/${_pkgname}-${pkgver/_/-}.tar.bz2" + hdf5-1.12.0-compat-1.6.patch) +sha256sums=('97906268640a6e9ce0cde703d5a71c9ac3092eded729591279bf2e3ca9765f61' + '72ad497c56760bb3af8193c88d3fa264125829850b843697de55d934c56f7f44') build() { - cd build - # Crazy workaround: run CMake to generate pkg-config file + mkdir -p build && cd build + CXX="mpicxx" \ + CC="mpicc" \ + FC="mpif90" \ + F9X="mpif90" \ RUNPARALLEL="mpirun" \ OMPI_MCA_disable_memory_allocator=1 \ - JAVADOC='javadoc -Xdoclint:none' \ - cmake ../${_pkgname}-${pkgver} \ - -DCMAKE_CXX_COMPILER=mpicxx \ - -DCMAKE_C_COMPILER=mpicc \ - -DCMAKE_Fortran_COMPILER=mpif90 \ - -DCMAKE_C_FLAGS="${CPPFLAGS} ${CFLAGS}" \ - -DCMAKE_CXX_FLAGS="${CPPFLAGS} ${CXXFLAGS}" \ - -DCMAKE_EXE_LINKER_FLAGS="${LDFLAGS}" \ - -DCMAKE_SHARED_LINKER_FLAGS="${LDFLAGS}" \ - -DCMAKE_MODULE_LINKER_FLAGS="${LDFLAGS}" \ - -DCMAKE_INSTALL_RPATH="" \ + cmake ../${_pkgname}-${pkgver/_/-} \ + -DCMAKE_INSTALL_PREFIX=/usr \ -DBUILD_SHARED_LIBS=ON \ -DCMAKE_BUILD_TYPE=Release \ - -DCMAKE_INSTALL_PREFIX="${_prefix}" \ -DALLOW_UNSUPPORTED=ON \ -DHDF5_BUILD_HL_LIB=ON \ -DHDF5_BUILD_CPP_LIB=ON \ -DHDF5_BUILD_FORTRAN=ON \ -DHDF5_BUILD_JAVA=ON \ + -DHDF5_ENABLE_PARALLEL=ON \ -DHDF5_ENABLE_Z_LIB_SUPPORT=ON \ -DHDF5_ENABLE_SZIP_SUPPORT=ON \ - -DHDF5_ENABLE_SZIP_ENCODING=ON \ - -DHDF5_ENABLE_PARALLEL=ON \ - -DBUILD_TESTING=OFF - + -DHDF5_ENABLE_SZIP_ENCODING=ON # But don’t build with it, it’s quite broken - "${srcdir}/${_pkgname}-${pkgver}"/configure \ + cd ../${_pkgname}-${pkgver/_/-} + ./configure \ CXX="mpicxx" \ CC="mpicc" \ FC="mpif90" \ F9X="mpif90" \ RUNPARALLEL="mpirun" \ OMPI_MCA_disable_memory_allocator=1 \ - JAVADOC='javadoc -Xdoclint:none' \ - --prefix="${_prefix}" \ - --docdir="${_prefix}/share/doc/${_pkgname}" \ + --prefix=/usr \ + --docdir=/usr/share/doc/hdf5/ \ + --with-examplesdir='${DESTDIR}/${prefix}/share/doc/hdf5/examples' \ --enable-static \ --disable-sharedlib-rpath \ --enable-build-mode=production \ @@ -92,22 +74,29 @@ build() { --with-pic \ --with-zlib \ --with-szlib - make } -package() { - cd build +check() { + cd ${_pkgname}-${pkgver/_/-} + # Without this, checks are failing with messages like “error while loading shared libraries: libhdf5.so.101: cannot open shared object file: No such file or directory” + export LD_LIBRARY_PATH="${srcdir}"/${pkgname}-${pkgver/_/-}/src/.libs/ + export LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"${srcdir}"/${pkgname}-${pkgver/_/-}/c++/src/.libs/ + export LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"${srcdir}"/${pkgname}-${pkgver/_/-}/fortran/src/.libs/ + export LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"${srcdir}"/${pkgname}-${pkgver/_/-}/hl/src/.libs/ + export LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"${srcdir}"/${pkgname}-${pkgver/_/-}/hl/c++/src/.libs/ + export LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"${srcdir}"/${pkgname}-${pkgver/_/-}/hl/fortran/src/.libs/ + # This is a parallel build, they are always OpenMPI bugs + make check || warning "Tests failed" +} +package() { + cd ${_pkgname}-${pkgver/_/-} make DESTDIR="${pkgdir}" install - - # Move examples to a proper place - install -dm755 "${pkgdir}${_prefix}/share/doc/${_pkgname}" - mv "${pkgdir}${_prefix}"/share/{hdf5_examples,doc/${_pkgname}/examples} - - install -Dm644 "${srcdir}/${_pkgname}-${pkgver}/COPYING" \ - "${pkgdir}/usr/share/licenses/${pkgname}/LICENSE" - - install -Dm644 CMakeFiles/hdf5{,_hl}{,_cpp}-${pkgver}.pc \ - -t "${pkgdir}${_prefix}"/lib/pkgconfig + install -Dm644 COPYING -t "${pkgdir}"/usr/share/licenses/${_pkgname} + # Install pkg-config files from CMake tree + install -Dm644 ../build/CMakeFiles/hdf5{,_hl}{,_cpp}-${pkgver}.pc -t "${pkgdir}"/usr/lib/pkgconfig/ + # Fix 1.6 compatibility for h5py + cd "${pkgdir}"/usr/include/ + patch -p1 -i "${srcdir}"/hdf5-1.12.0-compat-1.6.patch } |