diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 34 |
1 files changed, 27 insertions, 7 deletions
@@ -9,21 +9,41 @@ arch=('i686' 'x86_64') license=('GPLv3') optdepends=('ucsc-kent-genome-tools: for the blat tool, required for removing redundant sequences during motif finding' 'ghostscript: required for making motif logos') -depends=('perl' 'weblogo' 'wget') -source=("http://homer.salk.edu/homer/configureHomer.pl") -md5sums=('f0f52cfe22bfe341532a11d947aac803') -#options=(!strip docs libtool emptydirs !zipman staticlibs !upx) +depends=('perl' 'weblogo2' 'wget') +source=("http://homer.salk.edu/homer/data/software/homer.v${pkgver}.zip" "homer.sh") +md5sums=('173c9ad0e35d7639b89331de87505928' + '81a149ed531dcca7f0096901fd88ddeb') +install=('homer.install') prepare(){ -msg "preparing" + cd ${srcdir}/cpp + make clean } build(){ -msg "building" + #cd ${srcdir} + #perl configureHomer.pl -install homer + + cd ${srcdir}/cpp + make # this actually also copies the exes to bin/ then clean can't clean them + make clean } package() { -msg "packaging" + # just put everything into opt + mkdir -p "${pkgdir}/opt/${pkgname}" + cp -a ${srcdir}/* "${pkgdir}/opt/${pkgname}/." + + # link the main perl script + mkdir -p ${pkgdir}/usr/bin + chmod 755 "${pkgdir}/opt/${pkgname}/configureHomer.pl" + ln -s /opt/${pkgname}/configureHomer.pl ${pkgdir}/usr/bin/. + + # install profile file + install -m755 -D "${srcdir}/homer.sh" -t "${pkgdir}/etc/profile.d" + + # install license file + install -m644 -D "${srcdir}/COPYING" -t "${pkgdir}/usr/share/licenses/${pkgname}" } # vim:set ts=2 sw=2 et:# |