diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 39 |
1 files changed, 39 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..25f014972079 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,39 @@ +# Maintainer: Guoyi Zhang <guoyi zhang at malacology dot net> + +pkgname=mcscanx +_pkgname=MCScanX +pkgver=r53.b1ca533 +pkgrel=4 +pkgdesc="Multiple Collinearity Scan toolkit X version https://doi.org/10.1093/nar/gkr1293" +arch=('x86_64') +url="https://github.com/wyp1125/MCScanX" +license=('BSD') +depends=('java-runtime=11' 'glibc') +makedepends=('make' 'git' 'java-environment=11') +optdepends=('perl') +source=(git+https://github.com/wyp1125/MCScanX.git) +sha256sums=('SKIP') +pkgver(){ + cd $_pkgname + printf "r%s.%s" "$(git rev-list --count HEAD)" "$(git rev-parse --short HEAD)" +} + +build() { + cd "$_pkgname" + make +} + +package() { + cd "$_pkgname" + for bin in "duplicate_gene_classifier" "MCScanX" "MCScanX_h" +do + install -D -m 755 $bin $pkgdir/usr/bin/$bin +done + cd downstream_analyses + for downstream in *.java *.pl detect_collinear_tandem_arrays dissect_multiple_alignment +do + install -D -m 755 $downstream $pkgdir/usr/share/$pkgname/$downstream +done + +} + |