diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 39 |
1 files changed, 35 insertions, 4 deletions
@@ -1,12 +1,12 @@ # Maintainer of this PKBGUILD file: Martino Pilia <martino.pilia@gmail.com> pkgname=minc-toolkit-v2 -pkgver=1.9.15 -pkgrel=2 +pkgver=1.9.16 +pkgrel=1 pkgdesc="Medical Imaging NetCDF Toolkit" arch=('any') url="https://www.mcgill.ca/bic/software/minc" license=('GPL3') -depends=('perl' 'libjpeg-turbo' 'libxi' 'libxmu' 'libgl' 'glu' 'fftw' 'glut' 'netcdf' 'pcre' 'zlib' 'hdf5' 'nifticlib' 'insight-toolkit' 'elastix') +depends=('perl' 'libjpeg-turbo' 'libxi' 'libxmu' 'libgl' 'glu' 'fftw' 'glut' 'netcdf' 'pcre' 'zlib' 'hdf5' 'nifticlib' 'insight-toolkit' 'elastix' 'lapacke' 'blas') makedepends=('git' 'cmake' 'bc' 'libhdf5') provides=('minc-toolkit') source=('git+https://github.com/BIC-MNI/minc-toolkit-v2.git' @@ -14,7 +14,7 @@ source=('git+https://github.com/BIC-MNI/minc-toolkit-v2.git' sha512sums=('SKIP' '28e12be5c8c7e397a063fa570fd4819dc45daf845a608164b9e7aec6fb6fb99d58f4f494d648147613bb80393b88d40f63748ea9f6096d96a1df1e66d17bbed7') -_release_commit="29273c3f065c86496c6a1270355077b534e676a3" +_release_commit="f7952e966e2fdd6169098df8c8ae13968b3e4832" _itk=`ls /usr/lib/cmake | grep -m1 ITK` _install_prefix="/usr/share/minc" @@ -64,6 +64,37 @@ prepare() { '6iLINK_DIRECTORIES(${LIBMINC_LIBRARY_DIRS})' \ patch_morphology/legacy/CMakeLists.txt + # blas and liblapacke for patch_morphology + sed -i \ + '20ilapacke' \ + patch_morphology/src/CMakeLists.txt + sed -i \ + '51icblas' \ + patch_morphology/src/CMakeLists.txt + sed -i \ + '51ilapacke' \ + patch_morphology/src/CMakeLists.txt + sed -i \ + '76ilapacke' \ + patch_morphology/src/CMakeLists.txt + sed -i \ + '76icblas' \ + patch_morphology/src/CMakeLists.txt + + # blas and lapacke for spams_test in BEaST + sed -i \ + '166iblas' \ + BEaST/CMakeLists.txt + sed -i \ + '167ilapack' \ + BEaST/CMakeLists.txt + sed -i \ + '201iblas' \ + BEaST/CMakeLists.txt + sed -i \ + '201ilapack' \ + BEaST/CMakeLists.txt + # the compiler won't like this sed -i \ 's/enum {false=0, true=1};//' \ |