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Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 48 |
1 files changed, 48 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD new file mode 100644 index 000000000000..0ac24408e5e2 --- /dev/null +++ b/PKGBUILD @@ -0,0 +1,48 @@ +# Maintainer: Maël Kerbiriou <m431.kerbiriou@gmail.com> + +pkgname=minia-git +_pkgname=minia +pkgver=3.2.1.r12.g5b131b9 +pkgrel=1 +pkgdesc="short-read assembler based on a de Bruijn graph" +arch=('i686' 'x86_64') +url="https://github.com/GATB/bcalm" +license=('AGPL3') +conflicts=("$_pkgname") +provides=("$_pkgname") +depends=('gcc-libs' 'zlib') +makedepends=('cmake') +source=("git+https://github.com/GATB/minia.git" + "git+https://github.com/GATB/gatb-core.git") +md5sums=('SKIP' 'SKIP') + +prepare() { + cd "$_pkgname" + git submodule init + git config submodule.thirdparty/gatb-core.url "$srcdir/gatb-core" + git submodule update +} + +pkgver() { + cd "$_pkgname" + git describe --long | sed 's/^v//;s/\([^-]*-g\)/r\1/;s/-/./g' +} + +build() { + builddir="$srcdir/$_pkgname/build" + mkdir -p "$builddir" + cd "$builddir" + cmake .. -DCMAKE_BUILD_TYPE=Release -DCMAKE_INTERPROCEDURAL_OPTIMIZATION=True + make +} + +check() { + cd "$srcdir/$_pkgname/test" + ./simple_test.sh +} + +package() { + cd "$srcdir/$_pkgname" + install -Dm755 build/bin/minia "$pkgdir/usr/bin/minia" + install -Dm755 build/bin/merci "$pkgdir/usr/bin/merci" +} |