diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 13 |
1 files changed, 7 insertions, 6 deletions
@@ -2,7 +2,7 @@ # Contributor: Christian Krause ("wookietreiber") <christian.krause@mailbox.org> pkgname=mothur -pkgver=1.46.1 +pkgver=1.47.0 pkgrel=1 pkgdesc='A bioinformatics program for analyzing microbial communities.' arch=('x86_64') @@ -10,27 +10,28 @@ url='https://www.mothur.org/' license=('GPL3') depends=('boost-libs') makedepends=('boost' 'hdf5') -source=("${pkgname}-${pkgver}.tar.gz::https://github.com/${pkgname}/${pkgname}/archive/v${pkgver}.tar.gz") -sha256sums=('29b500b3c92d726cde34922f697f2e47f0b7127d76d9a6fb167cc2b8ba3d00fd') +source=("${pkgname}-${pkgver}.tar.gz::https://github.com/${pkgname}/${pkgname}/archive/v.${pkgver}.tar.gz") +sha256sums=('b33a1d56476c729fe0f7070345712caaee6b3aa2e603953eec052e945b6f2eab') prepare() { - cd "${pkgname}-${pkgver}" + cd "${pkgname}-v.${pkgver}" # I hate this so much. sed -i '87d' source/mothur.h sed -i '13 i \#include <memory>' source/writer.h + sed -i '17 i \#include "unistd.h"' source/utils.cpp sed -i 's/skipUchime),/skipUchime), source\/,/g' Makefile sed -i 's/CXXFLAGS = -O3/CXXFLAGS = -O3 -std=c++11/' source/uchime_src/makefile } build() { - cd "${pkgname}-${pkgver}" + cd "${pkgname}-v.${pkgver}" make } package() { - cd "${pkgname}-${pkgver}" + cd "${pkgname}-v.${pkgver}" install -Dm755 mothur "${pkgdir}/usr/bin/mothur" install -Dm755 uchime "${pkgdir}/usr/bin/uchime" |