diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 24 |
1 files changed, 12 insertions, 12 deletions
@@ -1,12 +1,11 @@ # Maintainer: Michael Schubert <mschu.dev at gmail> github.com/mschubert/PKGBUILDs # Contributor: Mick Elliot <micke at sfu dot ca> pkgname=ncbi-toolkit -pkgver=25.2.0 -_pkgver=${pkgver//./_} -pkgrel=2 +pkgver=27.0.0 +pkgrel=1 pkgdesc="Applications, scripts and C++ libraries for the analysis of biological data" arch=('i686' 'x86_64') -url="https://ncbi.github.io/cxx-toolkit/" +url="https://github.com/ncbi/ncbi-cxx-toolkit-public" license=('custom') depends=('python' 'pcre' 'sqlite' 'lzo' 'libtiff' 'giflib' 'libxpm' 'mariadb-libs' 'libpng' 'gnutls' 'libxml2' 'libxslt') @@ -14,10 +13,12 @@ optdepends=('fltk' 'wxgtk' 'fcgi') makedepends=('autoconf' 'cpio') provides=('blast+-bin') conflicts=('blast+-bin') -source=(https://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools++/2021/Sep_30_2021/ncbi_cxx--$_pkgver.tar.gz - LICENSE) -sha256sums=('9f824a92750e64e7b9be98d82b84414ab4f7e5d73392dadbb87c94ff5ccf9111' - '78bbf3f310ff43f1b5f711e7221d51da1e6f055831bd6c6941e0650bf1261df2') +source=($pkgname-$pkgver.tar.gz::$url/archive/refs/tags/release-$pkgver.tar.gz) +sha256sums=('c8fb3f99c6fce4f170b381f3a7789c76a2ff1c23c094c9852e2e3de1fdc57277') + +prepare() { + sed -i "39i#include <cstdint>" ncbi-cxx-toolkit-public-release-27.0.0/include/util/impl/compile_time_bits.hpp +} build() { # https://ncbi.github.io/cxx-toolkit/pages/ch_config#ch_config.UNIX @@ -39,15 +40,14 @@ build() { FLAGS="$FLAGS --with-64" fi - cd "$srcdir/ncbi_cxx--$_pkgver" - rm -f "$srcdir"/build/inc/ncbiconf_unix.h # in case of previous build + cd "ncbi-cxx-toolkit-public-release-$pkgver" +# rm -f "$srcdir"/build/inc/ncbiconf_unix.h # in case of previous build ./configure $FLAGS make } package() { - cd "$srcdir/ncbi_cxx--$_pkgver" - install -Dm644 "$srcdir"/LICENSE "$pkgdir"/usr/share/licenses/$pkgname/license + cd "ncbi-cxx-toolkit-public-release-$pkgver" make prefix="$pkgdir"/usr libdir="$pkgdir"/usr/lib install find "$pkgdir"/usr/bin -name "*test*" -delete } |