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diff --git a/PKGBUILD b/PKGBUILD
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+# This is the PKGBUILD for ngs-python
+# Maintainer: Georgios Amanakis <g_amanakis{at}yahoo{dt}com>
+
+pkgname=ngs-python
+_pkgname=ngs
+pkgver=2.9.6
+pkgrel=1
+pkgdesc="A new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing."
+arch=('x86_64')
+url="https://github.com/ncbi/ngs"
+depends=('java-environment' 'perl-file-copy-recursive' 'zlib' 'ncbi-vdb' 'ngs')
+provides=('ngs-python')
+license=('custom:PublicDomain')
+source=("https://github.com/ncbi/ngs/archive/$pkgver.tar.gz" "ngs.patch" "ngs-python.patch")
+md5sums=('d87f96dcfcaf4967ddbbf8de761641f8'
+         '3973d35d7a1b252eb6a426403a652ef9'
+         '105d75eb6e144af86569e1240e959702')
+
+prepare(){
+  cd "${_pkgname}-${pkgver}"
+  # ncbi build process frequently checks if we are root user which interferes 
+  #   with makepkg use of fakeroot
+  patch -p1 -i $srcdir/ngs.patch 
+  patch -p1 -i $srcdir/ngs-python.patch 
+}
+
+build(){
+  cd "${_pkgname}-${pkgver}"
+  ./configure --prefix="$pkgdir/usr/" --build-prefix="$srcdir/build"
+  cd ./ngs-python
+  ./configure --prefix="$pkgdir/usr/" --build-prefix="$srcdir/build" --with-ngs-sdk-prefix="/usr" --with-ncbi-vdb-prefix="/usr"
+  cd ../
+  make -C ngs-sdk
+  make -C ngs-python
+}
+
+#check(){
+#  cd "${pkgname}-${pkgver}"
+#  make -k test
+#}
+
+package(){
+  cd "$_pkgname-$pkgver"
+  # ncbi does not use autoconf/automake so there is no respect for DESTDIR
+  #   but there is a ROOT(dir)
+  #make "ROOT=$pkgdir" install
+  make -C ngs-python install
+
+  # add license
+  mkdir -p "$pkgdir/usr/share/licenses/${pkgname}"
+  cp "LICENSE" "$pkgdir/usr/share/licenses/${pkgname}/LICENSE"
+}