diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 17 |
1 files changed, 7 insertions, 10 deletions
@@ -1,7 +1,7 @@ # Maintainer: Lev Levitsky <levlev@mail.ru> pkgbase="percolator-git" pkgname=('percolator-git' 'percolator-converters-git' 'elude-git') -pkgver=3.02.01.r8.gf97ae1d +pkgver=3.04 pkgrel=1 pkgdesc="Software for postprocessing of shotgun proteomics data + format converters + Elude tool" url="http://percolator.ms/" @@ -9,10 +9,8 @@ license=('Apache') depends=('xerces-c' 'sqlite' 'libtirpc-compat' 'boost') arch=('x86_64') makedepends=('git' 'xsd' 'cmake' 'zlib') -source=('source::git+https://github.com/percolator/percolator' - 'percolator.patch') -md5sums=('SKIP' - '53c592a9db82da8474907a617ea688fb') +source=('source::git+https://github.com/percolator/percolator') +md5sums=('SKIP') pkgver() { cd "${srcdir}/source" @@ -21,7 +19,6 @@ pkgver() { prepare() { cd "${srcdir}/source" - patch -p1 -i "$srcdir/${pkgname%-git}.patch" cd "$BUILDDIR" for d in "${pkgname[@]}"; do mkdir "${d%-git}" @@ -36,10 +33,10 @@ build() { echo "------------------------" echo "Running cmake for percolator ..." echo "................................" - cmake -DTARGET_ARCH=x86_64 -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/usr -DXML_SUPPORT=ON "${srcdir}/source" + cmake -DTARGET_ARCH=x86_64 -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/usr -DXML_SUPPORT=ON -DCMAKE_PREFIX_PATH="/usr/include;/usr/lib" -DCMAKE_CXX_FLAGS="-l tirpc" "${srcdir}/source" echo "Running make for percolator ..." echo "..............................." - make + make -j 4 echo "------------------------" echo "Building converters ..." echo "------------------------" @@ -49,7 +46,7 @@ build() { cmake -DTARGET_ARCH=x86_64 -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=Release "${srcdir}/source/src/converters" echo "Running make for percolator-converters ..." echo ".........................................." - make + make -j 4 echo "------------------------" echo "Building Elude ..." echo "------------------------" @@ -59,7 +56,7 @@ build() { cmake -DTARGET_ARCH=x86_64 -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=Release "${srcdir}/source/src/elude_tool" echo "Running make for elude ..." echo ".........................." - make + make -j 4 } package_percolator-git() { |