diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 64 |
1 files changed, 39 insertions, 25 deletions
@@ -1,15 +1,14 @@ # Maintainer: Lev Levitsky <levlev@mail.ru> -pkgname=percolator-git -pkgver=2.10.r1.gd92d600 +pkgbase=percolator-git +pkgname=('percolator' 'percolator-converters' 'elude') +pkgver=2.10.r3.ga08619d pkgrel=1 pkgdesc="Software for postprocessing of shotgun proteomics data + format converters + Elude tool" url="http://per-colator.com/" license=('Apache') -depends=('tokyocabinet' 'xerces-c' 'sqlite') -arch=('x86_64' 'i686') -makedepends=('git' 'xsd' 'cmake' 'boost' 'zlib' ) -provides=("${pkgname%-git}") -conflicts=("${pkgname%-git}") +depends=('xerces-c' 'sqlite') +arch=('x86_64') +makedepends=('git' 'xsd' 'cmake' 'boost' 'zlib') source=('source::git+https://github.com/percolator/percolator' 'percolator.patch') md5sums=('SKIP' @@ -23,42 +22,57 @@ pkgver() { prepare() { cd "${srcdir}/source" patch -p1 -i "$srcdir/${pkgname%-git}.patch" + cd "$BUILDDIR" + mkdir "${pkgname[@]}" } build() { - cd "$BUILDDIR" - mkdir percolator converters elude - cd percolator + cd "$BUILDDIR"/percolator echo "------------------------" echo "Building percolator ..." echo "------------------------" - cmake "${srcdir}/source" + cmake -DTARGET_ARCH=amd64 -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/usr -DXML_SUPPORT=ON "${srcdir}/source" make echo "------------------------" echo "Building converters ..." echo "------------------------" - cd ../converters - cmake -DSERIALIZE="TokyoCabinet" "${srcdir}/source/src/converters" + cd ../percolator-converters + cmake -DTARGET_ARCH=amd64 -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=Release "${srcdir}/source/src/converters" make echo "------------------------" echo "Building Elude ..." echo "------------------------" cd ../elude - cmake "${srcdir}/source/src/elude_tool" + cmake -DTARGET_ARCH=amd64 -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=Release "${srcdir}/source/src/elude_tool" make } -package() { - cd "$BUILDDIR/percolator" +package_percolator() { + pkgdesc="Percolator and qvality, two post processors for shotgun proteomics data." + name="${pkgname[0]}" + provides=("$name") + conflicts=("$name") + + cd "$BUILDDIR/$name" make DESTDIR="$pkgdir/" install - cd "$BUILDDIR/converters" - make DESTDIR="$pkgdir/" install - cd "$BUILDDIR/elude" +} + +package_percolator-converters() { + pkgdesc="Parsers of different database search engines to percolator input format." + name="${pkgname[1]}" + provides=("$name") + conflicts=("$name") + + cd "$BUILDDIR/$name" make DESTDIR="$pkgdir/" install - install -D "${srcdir}/source/license.txt" "${pkgdir}/usr/share/licenses/percolator/license.txt" - install -d "$pkgdir/usr/bin" - install -d "$pkgdir/usr/share/${pkgname%-git}" - mv "$pkgdir"/usr/local/share/* "$pkgdir/usr/share/${pkgname%-git}" - mv "$pkgdir"/usr/local/bin/* "$pkgdir/usr/bin" - rm -r "$pkgdir/usr/local" } + +package_elude() { + pkgdesc="Software package for prediction of retention times in mass spectorometry experiments." + name="${pkgname[2]}" + provides=("$name") + conflicts=("$name") + + cd "$BUILDDIR/$name" + make DESTDIR="$pkgdir/" install +}
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