diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 363 |
1 files changed, 198 insertions, 165 deletions
@@ -1,179 +1,212 @@ -# Maintainer: Lucas H. Gabrielli <heitzmann@gmail.com> +# Based on AUR petsc and petsc-git package. -pkgname=petsc-git -pkgver=20210515 -pkgrel=1 -_config=linux-c-opt -pkgdesc="Portable, extensible toolkit for scientific computation (external downloads enabled)" -provides=(petsc) -conflicts=(petsc) +# Contributor: Lucas H. Gabrielli <heitzmann@gmail.com> +# Contributor: Martin Diehl <aur@martin-diehl.net> + +_base=petsc +pkgname=("${_base}"-git "${_base}"-doc) +pkgver=3.15.4.27.g1085e15b135 +pkgrel=2 +_mainver="${pkgver:0:6}" +pkgdesc="Portable, extensible toolkit for scientific computation" arch=('i686' 'x86_64') -url="https://gitlab.com/petsc/petsc" +url="https://gitlab.com/petsc/${_base}" license=('BSD') -depends=('openmpi' 'lapack' 'fftw' 'hdf5' 'suitesparse' 'metis' 'parmetis' 'superlu' 'eigen' 'cython' 'python-mpi4py') -makedepends=('gcc' 'gcc-fortran' 'cmake' 'sowing' 'python' 'git' 'cython' 'chrpath') -optdepends=("opencl: GPU computing" - "hwloc: hardware locality" - "cgns: CFD data support" - "libpng: PNG support" - "libyaml: YAML configuration support" - "libx11: GUI tools") -install=petsc.install -source=(petsc::git+https://gitlab.com/petsc/petsc.git#branch=release) -sha256sums=('SKIP') - -_petsc_arch="arch-${_config}" -_petsc_dir='/usr/local/petsc' -_install_dir="${_petsc_dir}/${_config}" - -generic_flags="-fPIC -fopenmp -O3 -march=x86-64 -mtune=generic" -# generic_flags="-fPIC -fopenmp -O3 -march=amdfam10 -mtune=generic" - -export COPTFLAGS=-O3 -export CXXOPTFLAGS=-O3 -export FOPTFLAGS=-O3 -export CPPFLAGS="$generic_flags -O2 -D-FORTIFY-SOURCE=2" -export CFLAGS="$generic_flags" -export CXXFLAGS="$generic_flags" -export FFLAGS="$generic_flags" -export FCFLAGS="$generic_flags" -export F90FLAGS="$generic_flags" -export F77FLAGS="$generic_flags" - - -pkgver() { - cd petsc - git log --format="%cd" --date=short -1 | sed 's/-//g' -} +options=(!staticlibs) +depends=('openmpi' 'lapack' 'fftw' 'zlib' 'cython' + 'python-mpi4py' "python-numpy" "eigen>=3" "openblas") +makedepends=('gcc' 'gcc-fortran' 'cmake' 'sowing' + 'git' 'cython' 'chrpath' "hypre=2.18.2") +source=(git+${url}.git#branch=release + https://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-with-docs-"${_mainver}".tar.gz + test_optdepends.sh + petsc4py_newuser.patch + blaslapack_download.patch) +sha512sums=('SKIP' + 'b6a1d48aab1c2639a4c1cbd8b313ace253f1c36eedaa3de3508ffbd6060e1def99e2f516ed9bb509307f614b41791d09342e2c2280c0b2c25dda1092b0e569d2' + '2c2c48f6b87e24b6f5fccfd2a6eb0889d47385c0be7ba14614c55c774f8b915c33a5d5ec5cc1637d41f7407423b77ac1bcc129bfa3d7967bb917ad8d1de3a6b5' + '038f4f54cb8771590b528e41666f33095d9381bf07636c53841293a3937faeb8604bfe3cb98fac588b647661ea74602e6c261cf7809e0cec7ed086e8b01b5f01' + 'af899ea1d06bf6d4cee1c1fe86902ba2772d1001caf00e89363c6217fed9dd837588ee6f7f827ca8b8fd2a01316fbcd73d98874e28d452af71b9598127b6f179') +_config=linux-c-opt +_install_dir="/usr" + +# From UPC: Building And Using Static And Shared "C" +# Libraries.html +# #+begin_QUOTE +# we need that all jump calls ("goto", in assembly speak) +# and subroutine calls will use relative addresses, and not +# absolute addresses. Thus, we need to use ... ~-fPIC~ or +# ~-fpic~ +# #+end_QUOTE +# +# From makepkg.conf +# -march (or -mcpu) builds exclusively for an architecture +# -mtune optimizes for an architecture, but builds for +# whole processor family +# +# -O3 optimises +# +# -D-FORTIFY-SOURCE=2 +# | https://stackoverflow.com/a/16604146 +# |- man 7 feature_test_macros +# checks to be performed to detect some buffer overflow +# errors when employing various string and memory +# manipulation functions ... some conforming programs +# might fail +# +# -fcf-protection +# | Info pages for gcc (gnu compiler collection) +# intended to protect against such threats as +# Return-oriented Programming (ROP), and similarly +# call/jmp-oriented programming (COP/JOP) +# +# -pipe +# | Info pages for gcc (controlling the kind of output) +# Use pipes rather than temporary files for communication +# between the various stages of compilation +# +# -fno-plt +# | Info pages for gcc (code generation conventions) +# leads to more efficient code by eliminating PLT stubs and +# exposing GOT loads to optimizations +# +# -fopenmp +# | Info pages for gcc (controlling c dialect) +# Enable handling of OpenMP directives +# + +safe_flags="-Wp,-D-FORTIFY-SOURCE=2,-D_GLIBCXX_ASSERTIONS" +safe_flags+=" -fcf-protection -fno-plt" +safe_flags+=" -fstack-clash-protection -Wformat" +safe_flags+=" -Werror=format-security" +generic_flags="-pipe -fno-plt -fPIC -fopenmp" +generic_flags+=" -march=native" +generic_flags+=" -mtune=native ${safe_flags}" +opt_flags="${generic_flags} -O3" +generic_flags="${generic_flags} -O2" + +export LANG=C +export OMPI_MCA_opal_cuda_support=0 +unset PETSC_DIR +export PETSC_ARCH=${_config} prepare() { - cd "${srcdir}/petsc" - sed -i 's-\(self.publicInstall[^=]*=[[:space:]]\)[^#]*-\10 -g' config/BuildSystem/config/package.py + patch -p1 -i blaslapack_download.patch + patch -p1 -i petsc4py_newuser.patch } - -build() { - cd petsc - - declare -a CONFOPTS - CONFOPTS=( - --COPTFLAGS="$COPTFLAGS" - --CXXOPTFLAGS="$CXXOPTFLAGS" - --CPPFLAGS="$CPPFLAGS" - --CFLAGS="$CFLAGS" - --CXXFLAGS="$CXXFLAGS" - --FFLAGS="$FFLAGS" - --FCFLAGS="$FCFLAGS" - --F90FLAGS="$F90FLAGS" - --F77FLAGS="$F77FLAGS" - - --with-cxx-dialect=C++11 - --with-mpi=1 - --with-pic=1 - --with-shared-libraries=1 - --with-zlib=1 - - --with-fftw=1 - --with-hdf5=1 - --with-suitesparse=1 - - --with-parmetis=1 - --with-metis=1 - --with-superlu=1 - --with-superlu-include=/usr/include/superlu - --with-superlu-lib=superlu - --with-eigen=1 - --with-eigen-pkg-config=/usr/share/pkgconfig - - --with-scalar-type=complex - - --download-scotch=1 - --download-ptscotch=1 - --download-mumps=1 - --download-scalapack=1 - --download-hypre=1 - ) - - CONFOPTS=( "${CONFOPTS[@]}" ) - - # Add OpenCL support - OPENCL_DIR="/usr/include/CL/" - if [ -f "${OPENCL_DIR}/cl.h" ]; then - CONFOPTS="${CONFOPTS} --with-opencl=1" - fi - - # Add hwloc support - if [ -f "/usr/lib/libhwloc.so" ]; then - CONFOPTS="${CONFOPTS} --with-hwloc=1 --with-hwloc-pkg-config=/usr/lib/pkgconfig/" - fi - - # Add CGNS support - if [ -f "/usr/lib/libcgns.so" ]; then - CONFOPTS="${CONFOPTS} --with-cgns=1" - fi - - # Add PNG support - if [ -f "/usr/lib/libpng.so" ]; then - CONFOPTS="${CONFOPTS} --with-png=1 --with-png-pkg-config=/usr/lib/pkgconfig/" - fi - - # Add YAML support - if [ -f "/usr/lib/libyaml.so" ]; then - CONFOPTS="${CONFOPTS} --with-yaml=1 --with-yaml-pkg-config=/usr/lib/pkgconfig/" - fi - - # if --with-debugging=1 is set then PETSC_ARCH is automatically set to - # "linux-c-debug" for some things, so _config should be changed to "linux-c-debug" - #CONFOPTS="${CONFOPTS} --with-debugging=1" - - export PETSC_DIR="${srcdir}/petsc" - export PETSC_ARCH="${_petsc_arch}" - - python ./configure LDFLAGS="$LDFLAGS" \ - --prefix="${_install_dir}" \ - --MAKEFLAGS="$MAKEFLAGS" \ - $(for (( i=1; i<=${#CONFOPTS[@]}; i++)); do echo "${CONFOPTS[$i]}"; done) - - make all +pkgver() { + cd "${srcdir}"/"${_base}" + git describe --tags --match '*.*' | tr '-' '.' | sed 's-^v--' } -package() { - cd petsc - - _build_dir="${srcdir}/petsc" - - export PETSC_DIR=${_build_dir} - export PETSC_ARCH="${_petsc_arch}" - - make DESTDIR="${pkgdir}" install - - # petsc4py - pushd ${_build_dir}/src/binding/petsc4py - CFLAGS="$(echo "${CFLAGS}" | sed 's%-D[^[:space:]]*%%g')" python setup.py install --root="${pkgdir}" - popd - - # install license - install -Dm 644 ${_build_dir}/LICENSE ${pkgdir}/usr/share/licenses/${pkgname}/LICENSE - - mkdir -p "${pkgdir}/etc/profile.d" - printf "export PETSC_DIR=${_install_dir}" > "${pkgdir}/etc/profile.d/petsc.sh" - chmod +x "${pkgdir}/etc/profile.d/petsc.sh" - - # show where the shared libraries are - install -dm 755 "${pkgdir}/etc/ld.so.conf.d/" - printf "${_install_dir}/lib" > "${pkgdir}/etc/ld.so.conf.d/petsc.conf" +build() { - printf "PETSC_DIR = ${_petsc_dir}\nPETSC_ARCH = ${_petsc_arch}" \ - > "${pkgdir}/usr/lib/python3.9/site-packages/petsc4py/lib/petsc.cfg" + CONFOPTS=( + --silent --enable-silent-rules + --ignoreWarnings=1 + --prefix="${_install_dir}" + --COPTFLAGS="${opt_flags}" + --CXXOPTFLAGS="${opt_flags}" + --FOPTFLAGS="${opt_flags}" + --CFLAGS="${generic_flags}" + --CXXFLAGS="$generic_flags" + --CPPFLAGS="$generic_flags" + --FCFLAGS="$generic_flags" + --F90FLAGS="$generic_flags" + --FFLAGS="$generic_flags" + --MAKEFLAGS=${MAKEFLAGS} + --LDFLAGS=${LDFLAGS} + --with-environment-variables=0 + --disable-environment-variables=1 + --with-cxx-dialect=auto + --with-mpi=1 + --with-pic=1 + --with-shared-libraries=1 + --with-zlib=1 + --with-petsc4py=1 + --with-scalar-type=complex + --with-single-library=1 + " $(sh ${srcdir}/test_optdepends.sh)") + + cd "${srcdir}"/"${_base}" + python ./configure ${CONFOPTS[@]} + + make -s ${MAKEFLAGS} all +} - _rem_dir="${_build_dir}/${_petsc_arch}" +check() { + cd "${srcdir}"/"${_base}" + make check + } + +package_petsc-git() { + optdepends=( + "boost: Free peer-reviewed portable C++ source libraries" + "cgns: Recording and recovering computer data" + "eigen: Lightweight C++ template library for vector and matrix math" + "fftw: Fast-Fourier Transform" + "gdb: Debugging" + "hdf5: large files" + "hwloc: Portable Hardware Locality (abstraction of hierarchical architectures)" + "med>=4.0: Data Modelization and Exchanges (meshes)" + "metis: Partitioning library (for meshes)" + "mumps: Sparse solver library" + "openblas: Linear algebra libraries" + "opencl-headers: for opencl (GPU computing)" + "opencl: GPU computing" + "openmp: Parallel distributed tasks" + "png" + "scalapack: Parallel memory linear algebra" + "scotch: Partitioning with sparse matrices" + "suitesparse: Sparse matrix library" + "superlu: Subroutines for sparsse linear systems" + "yaml: configuration files") + provides=(${_base}="${_mainver}" petsc4py="${_mainver}") + conflicts=(${_base}) + + unset PETSC_DIR + _build_dir="${srcdir}"/"${_base}" + + make -C "${_build_dir}" \ + ${MAKEFLAGS} DESTDIR="${pkgdir}" install + + export PETSC_DIR=${_install_dir} + + # install licence (even though there is no such word as licenses) + install -Dm 644 ${_build_dir}/LICENSE \ + "${pkgdir}"/"${_install_dir}"/share/licenses/"${pkgname}"/LICENSE + + mkdir -p "${pkgdir}"/etc/profile.d + echo "export PETSC_DIR=${_install_dir}" > \ + "${pkgdir}"/etc/profile.d/${_base}.sh + echo "export PYTHONPATH=\$PYTHONPATH:/${_install_dir}/${_base}/${_config}/lib" \ + >> "${pkgdir}"/etc/profile.d/${_base}.sh + chmod +x "${pkgdir}"/etc/profile.d/${_base}.sh + + # show where the shared libraries are + install -dm 755 "${pkgdir}"/etc/ld.so.conf.d/ + echo "${_install_dir}/lib" > \ + "${pkgdir}"/etc/ld.so.conf.d/${_base}.conf + + # install pkgconfig settings + install -Dm 644 "${_build_dir}/${_config}"/lib/pkgconfig/PETSc.pc \ + "${pkgdir}"/"${_install_dir}"/share/pkgconfig/PETSc.pc +} - sed -i "s#-L${_rem_dir}/lib ##" "${pkgdir}${_install_dir}/lib/pkgconfig/PETSc.pc" - sed -i "s#-L${_rem_dir}/lib ##" "${pkgdir}${_install_dir}/lib/pkgconfig/petsc.pc" - sed -i "s#${_rem_dir}#${_install_dir}#g" "${pkgdir}${_install_dir}/include/petscmachineinfo.h" - sed -i "s#${_rem_dir}#${_install_dir}#g" "${pkgdir}${_install_dir}/lib/petsc/conf/pkg.conf.mumps" - sed -i "s#${_rem_dir}#${_install_dir}#g" "${pkgdir}${_install_dir}/lib/petsc/conf/pkg.conf.hypre" - sed -i "s#${_rem_dir}#${_install_dir}#g" "${pkgdir}${_install_dir}/lib/petsc/conf/petscvariables" - sed -i "s#${_rem_dir}#${_install_dir}#g" "${pkgdir}${_install_dir}/lib/petsc/conf/petscrules" +package_petsc-doc () { + depends=() + optdepends=() + provides=(${_base}-doc) + replaces=(${_base}-doc) + conflicts=() + pkgdesc="Documentation for PETSc" + # Two options: compile the documentation or get it from + # the web. Downloading is easier. + [[ -d ${pkgdir}/${_install_dir}/share/doc ]] && \ + rm -fr "${pkgdir}"/"${_install_dir}"/share/doc + mkdir -p "${pkgdir}"/"${_install_dir}"/share/doc + cp -r "${srcdir}/${_base}-${_mainver}/docs" \ + "${pkgdir}"/"${_install_dir}"/share/doc/${_base} } |