diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 38 |
1 files changed, 16 insertions, 22 deletions
@@ -1,42 +1,36 @@ -# Maintainer: Charles Vejnar +# Maintainer: Charles Vejnar <first name [dot] last name [at] gmail [dot] com> pkgname=phast -pkgver=1.5 +pkgver=1.6 pkgrel=1 pkgdesc="Phylogenetic analysis with space/time models" -arch=("i686" "x86_64") +arch=("x86_64") url="http://compgen.bscb.cornell.edu/phast" license=("BSD") -makedepends=("cmake") -source=("http://www.netlib.org/clapack/clapack-3.2.1-CMAKE.tgz" "http://compgen.cshl.edu/phast/downloads/phast.v${pkgver//./_}.tgz") -sha1sums=("5ea1bcc4314e392bca8b9e5f61d44355cf9f4cc1" "064f409e8e3698484a18731d247e0576213b423b") +source=("http://www.netlib.org/clapack/clapack.tgz" + "https://github.com/CshlSiepelLab/phast/archive/refs/tags/v${pkgver}.tar.gz") +sha1sums=("8b284658999d1eb71adb6ad521c6118e2db57a99" + "bd489a547e40fbaab3b7785b7435f8cf720dc613") build() { # Build CLAPACK - cd "$srcdir/clapack-3.2.1-CMAKE" - mkdir build - cd build - cmake .. - make - - # Add symbolic links - ln -s ./BLAS/SRC/libblas.a blas.a - ln -s ./SRC/liblapack.a lapack.a - ln -s ./TESTING/MATGEN/libtmglib.a tmglib.a - ln -s ./libf2c/libf2c.a F2CLIBS/libf2c.a - cp -r ../INCLUDE . + cd "$srcdir/CLAPACK-3.2.1" + cp make.inc.example make.inc + make f2clib + make blaslib + make lib # Build Phast - cd "$srcdir/phast/src" - make CLAPACKPATH=$srcdir/clapack-3.2.1-CMAKE/build + cd "$srcdir/phast-${pkgver}/src" + make CLAPACKPATH="$srcdir/CLAPACK-3.2.1" } package() { - cd "$srcdir/phast/bin" + cd "$srcdir/phast-${pkgver}/bin" for fname in $(ls -1); do install -Dm755 $fname "$pkgdir/usr/bin/$fname" done - cd "$srcdir/phast/doc/man" + cd "$srcdir/phast-${pkgver}/doc/man" for fname in $(ls -1); do install -Dm644 $fname "$pkgdir/usr/share/man/man1/$fname" done |