diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 39 |
1 files changed, 5 insertions, 34 deletions
@@ -1,45 +1,16 @@ # Maintainer: Grey Christoforo <first name at last name dot net> pkgname=picard-tools -pkgver=2.24.1 -pkgrel=1 +pkgver=2.27.1 +pkgrel=2 pkgdesc='set of tools for working with next generation sequencing data in the BAM format' arch=(x86_64) url="https://github.com/broadinstitute/picard" license=(MIT) depends=('java-runtime=8') -makedepends=(gradle) -source=("${pkgname}-${pkgver}.tar.gz::https://github.com/broadinstitute/picard/archive/${pkgver}.tar.gz") -sha256sums=('90a81f5df465d874e1b5a28a0fb4e2efafb872b5d5e0d726b8a81d3b6f9bb04b') - -prepare(){ - cd picard-${pkgver} - - # disable git repo check - sed -i '/file(".git").isDirectory() || (file(".git").exists() && file(".git").text.startsWith("gitdir"))/c\true' -i build.gradle - - # make the launch script - cat <<EOF > picard -#!/bin/sh -exec /usr/bin/java -jar '/usr/share/java/picard-tools/picard.jar' "\$@" -EOF -} - -build() { - cd picard-${pkgver} - gradle shadowJar -} - -check(){ - cd picard-${pkgver} - gradle test -} +source=(https://github.com/broadinstitute/picard/releases/download/${pkgver}/picard.jar) +sha256sums=('87e94cebeeeaaa19dd2a5ab2d76b9ac51b007fbe5926294f9bb83b6811513152') package() { - cd picard-${pkgver} - - install -Dt "${pkgdir}"/usr/share/java/picard-tools -m644 build/libs/picard.jar - install -Dt "${pkgdir}"/usr/bin -m755 picard - - install -Dt "${pkgdir}/usr/share/licenses/${pkgname}" -m644 LICENSE.txt + install -Dm 755 picard.jar $pkgdir/usr/share/$pkgname/picard.jar } |