1 files changed, 33 insertions, 0 deletions
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 000000000000..70274f11eb3a
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,33 @@
+# Maintainer: Christian Krause ("wookietreiber") <kizkizzbangbang@googlemail.com>
+
+pkgname=picard-tools
+pkgver=1.133
+pkgrel=1
+pkgdesc='set of tools for working with next generation sequencing data in the BAM format'
+arch=('i686' 'x86_64')
+url="https://github.com/broadinstitute/picard"
+license=('GPL2')
+depends=('bash' 'java-runtime>=6')
+source=("https://github.com/broadinstitute/picard/releases/download/$pkgver/$pkgname-$pkgver.zip"
+        'picard-profile.sh'
+        'picard.sh')
+md5sums=('93a987e67ce4a05ac68559515a1352f2'
+         'ebcda2d2c55df6d05994252cf22a68c2'
+         '0987aa56f62f5e843bfa788cc93626c8')
+
+package() {
+  cd $srcdir/$pkgname-$pkgver
+
+  for f in *.jar ; do
+    install -Dm755 $f $pkgdir/usr/share/java/picard-tools/$f
+  done
+
+  install -Dm755 libIntelDeflater.so $pkgdir/usr/lib/libIntelDeflater.so
+
+  pushd $pkgdir/usr/share/java/picard-tools > /dev/null
+  ln -s ../../../lib/libIntelDeflater.so
+  popd > /dev/null
+
+  install -Dm755 $srcdir/picard.sh         $pkgdir/usr/bin/picard
+  install -Dm755 $srcdir/picard-profile.sh $pkgdir/etc/profile.d/picard.sh
+}