diff options
Diffstat (limited to 'PKGBUILD')
| -rw-r--r-- | PKGBUILD | 17 |
1 files changed, 16 insertions, 1 deletions
@@ -2,7 +2,7 @@ pkgname=proovread pkgver=2.12 -pkgrel=2 +pkgrel=3 pkgdesc="large-scale high accuracy PacBio correction through iterative short read consensus" arch=('i686' 'x86_64') url="https://github.com/BioInf-Wuerzburg/proovread" @@ -21,6 +21,13 @@ prepare() { -e "s|'shrimp-path' => \$RealBin.'/../util/shrimp-2.2.3/'|'shrimp-path' => ''|" \ -e "s|'blasr-path' => \$RealBin.'/../util/blasr-1.3.1/'|'blasr-path' => ''|" \ -i proovread.cfg + + sed -e 's|my $cfg_core_file = "$RealBin/../proovread.cfg";|my $cfg_core_file = "/usr/share/proovread/proovread.cfg";|' \ + -e 's|my $cfg_core_file = "../proovread.cfg";|my $cfg_core_file = "/usr/share/proovread/proovread.cfg";|' \ + -i bin/bam2cns \ + bin/proovread \ + bin/sam2cns \ + bin/test_cfg.pl } build() { @@ -29,6 +36,14 @@ build() { make } +# check() { +# cd $srcdir/$pkgname/t + +# for testfile in *.t ; do +# perl $testfile +# done +# } + package() { cd $srcdir/$pkgname |